View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11961_low_11 (Length: 388)
Name: NF11961_low_11
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 27585337 - 27585695
Alignment:
| Q |
1 |
ggtgcacatttgttatctgtatata--aattgaattgaaccttatatcattctacttctccaaatcatatagattggtgttaggaaaatttagtggcttc |
98 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27585337 |
ggtgcacatttgttatctctatatataaattgaattgaaccttatatcattctacttctccaagtcatatagattggtgttaggaaaatttagtggcttc |
27585436 |
T |
|
| Q |
99 |
tccaaatcatattccaannnnnnnaaaggaaaaacattccaattttatattatattctgcaatgaatattaccaaatctttattatgtacaaaggaattc |
198 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
27585437 |
tccaaatcatatttcaattttttaaaaggaaaaacattccaattttatattatattctacaatgaat------------------tctacaaaggaattc |
27585518 |
T |
|
| Q |
199 |
atatttttgggtaaatggaacagatatcaatccgctatgaagaaaagnnnnnnntagaaagagaatctctctttgcaataaaggagataggtagaagtca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27585519 |
atatttttgggtaaatggaacagatatcaatccgctatgaagaaaagaaaaaaatagaaagagaatctctctttgcaataaaggagataggtcgaagtca |
27585618 |
T |
|
| Q |
299 |
aaat----aac-ttgatttggtttccacttggcctttttcaattccatttttagaacaatttttcttactctccaat |
370 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27585619 |
aaatcaggaactttgatttggtttccacttggcctttctcaattccatttttagaacaatttttcttactctgcaat |
27585695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 45725350 - 45725316
Alignment:
| Q |
253 |
tagaaagagaatctctctttgcaataaaggagata |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45725350 |
tagaaagagaatctctctttgcaataaaggagata |
45725316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University