View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11961_low_12 (Length: 385)

Name: NF11961_low_12
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11961_low_12
NF11961_low_12
[»] chr3 (10 HSPs)
chr3 (206-369)||(20014792-20014955)
chr3 (206-369)||(26648461-26648624)
chr3 (15-170)||(20014991-20015146)
chr3 (220-367)||(20006865-20007012)
chr3 (206-331)||(17115408-17115533)
chr3 (211-369)||(26654466-26654624)
chr3 (7-70)||(26648280-26648343)
chr3 (7-66)||(20007166-20007225)
chr3 (222-283)||(19990584-19990645)
chr3 (14-66)||(20035437-20035489)
[»] chr5 (4 HSPs)
chr5 (206-369)||(26353521-26353684)
chr5 (206-369)||(9816398-9816561)
chr5 (32-164)||(26353726-26353858)
chr5 (9-140)||(9816201-9816332)
[»] chr1 (1 HSPs)
chr1 (211-369)||(1718499-1718657)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 206 - 369
Target Start/End: Complemental strand, 20014955 - 20014792
Alignment:
Q  206 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 305  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||    
T  20014955 tgatcatgaagctttggttttcttaaaagagcaatacttgaagaatcaagaggaactcaggcttctggcaagacaacaagatgagatgttacggctaatg 20014856  T
Q  306 gatttgaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaac 369  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  20014855 gatttgaagatgaagagggatgaagagttgagacaacttctcactagttttctaaagaatcaac 20014792  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 206 - 369
Target Start/End: Original strand, 26648461 - 26648624
Alignment:
Q  206 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 305  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||| | ||||||||||||||||| |||||||| | ||||||     
T  26648461 tgatcatgaagttgtggttttgttaaaagagctatacttgaagaaccaagaggaactcaggcgcctggcaagacaacaagaaaagatgtttcagttaata 26648560  T
Q  306 gatttgaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaac 369  Q
    |||||||||  |||||||||||||||| |||| ||||| ||||||||| |||| ||||||||||    
T  26648561 gatttgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctaaagaatcaac 26648624  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 20015146 - 20014991
Alignment:
Q  15 gaagtaaggatgtctagtgacagagtctgtttatctgagactcaagctgaaagcaaacacttttcaatcagnnnnnnngtctctttgtccaacaatgtag 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||       |||||||||||||||||||| |    
T  20015146 gaagtaaggatgactagtgacagagtctgtttatctgagactcaagctgaaagcaaacagttttctatcagaaaaaaagtctctttgtccaacaatgtgg 20015047  T
Q  115 ctgttgcgcagcaagatcttcagttttgccctggtctttctgttcaagcacaatct 170  Q
    ||||||||||| || |||||||||||  |  |||| |||||  |||||||||||||    
T  20015046 ctgttgcgcagaaaaatcttcagtttcactatggtatttctactcaagcacaatct 20014991  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 220 - 367
Target Start/End: Complemental strand, 20007012 - 20006865
Alignment:
Q  220 tggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatggatttgaagatgaa 319  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||||  ||||||||  | |||||| ||||  |  |||    
T  20007012 tggttttgttaaaagagcaatacttgaagaatcaagaggaactcacgcatctggcaagacaacaagaggagatgttagaggtaatggctttgtgggagaa 20006913  T
Q  320 gagggatgaagagctgagacaacttctcactagttttctgaagaatca 367  Q
    ||||||||||||| ||||||| || || |||||| |||| | ||||||    
T  20006912 gagggatgaagagttgagacacctccttactagtgttctaaggaatca 20006865  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 331
Target Start/End: Original strand, 17115408 - 17115533
Alignment:
Q  206 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 305  Q
    ||||||||||  | ||||| || |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||   |||||| | |||||||    
T  17115408 tgatcatgaaaatgtggttctgctaaaagagcaatacttgaagaatcaagacgaactcaggcgtctggcaagacaacatgaagtgatgtttcagttaatg 17115507  T
Q  306 gatttgaagatgaagagggatgaaga 331  Q
    | ||||||   |||||||| ||||||    
T  17115508 gctttgaaagagaagaggggtgaaga 17115533  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 369
Target Start/End: Original strand, 26654466 - 26654624
Alignment:
Q  211 atgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatggattt 310  Q
    |||||||| || |||| || ||||||||   | ||||||||||||||||| |     |||| ||||||||||||||  |||||||||| |||||||||||    
T  26654466 atgaagttgtgattttattgaaagagcatagcttgaagaatcaagaggaaatggcacgtctagcaagacaacaagaagagatgttacgtttaatggattt 26654565  T
Q  311 gaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaac 369  Q
    || |  ||| || ||||||||| |||| ||||||||||||||| |||| | ||||||||    
T  26654566 gagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaaggaatcaac 26654624  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 26648280 - 26648343
Alignment:
Q  7 ggagcagagaagtaaggatgtctagtgacagagtctgtttatctgagactcaagctgaaagcaa 70  Q
    |||||| | ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  26648280 ggagcaaacaagcaaggatgtctaatgacagagtctgtttatctgagactcaaggtgaaagcaa 26648343  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 20007225 - 20007166
Alignment:
Q  7 ggagcagagaagtaaggatgtctagtgacagagtctgtttatctgagactcaagctgaaa 66  Q
    |||||| ||||| ||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  20007225 ggagcaaagaagcaagaatgtctagtgacagtctctgtttatctgagactcaaggtgaaa 20007166  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 19990584 - 19990645
Alignment:
Q  222 gttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaaca 283  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||   ||||||||||| ||||    
T  19990584 gttttcttaaaagagaaatacttgaagaatcaagaggaactcacacgtctggcaagagaaca 19990645  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 20035489 - 20035437
Alignment:
Q  14 agaagtaaggatgtctagtgacagagtctgtttatctgagactcaagctgaaa 66  Q
    ||||| |||||| |||||||||| ||| ||||||||||||||||||| |||||    
T  20035489 agaagcaaggatttctagtgacaaagtttgtttatctgagactcaaggtgaaa 20035437  T

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Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 206 - 369
Target Start/End: Complemental strand, 26353684 - 26353521
Alignment:
Q  206 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 305  Q
    |||||||||| || |||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||  |||||||||| |||||     
T  26353684 tgatcatgaacttgtggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacgattaata 26353585  T
Q  306 gatttgaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaac 369  Q
    |||| ||||  |||||||||||||||| |||| ||||| ||||||||| |||||||||||||||    
T  26353584 gattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctgaagaatcaac 26353521  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 206 - 369
Target Start/End: Original strand, 9816398 - 9816561
Alignment:
Q  206 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 305  Q
    ||||||||| ||| |||||| ||||||||||||| || ||||| ||||| ||||||| ||| || ||||||||||||||||  ||||||| | ||||||     
T  9816398 tgatcatgatgttctggtttggttaaaagagcaacacttgaaggatcaaaaggaacttaggcgtttggcaagacaacaagaagagatgtttcagttaata 9816497  T
Q  306 gatttgaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaac 369  Q
    |||||||||  |||||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  9816498 gatttgaaggagaagagggatgaagagttgaggcatcttctcactagttttctcaagaatcaac 9816561  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 26353858 - 26353726
Alignment:
Q  32 tgacagagtctgtttatctgagactcaagctgaaagcaaacacttttcaatcagnnnnnnngtctctttgtccaacaatgtagctgttgcgcagcaagat 131  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||||| ||||        ||||||| ||||||||||||| ||||| || ||||||||    
T  26353858 tgacagagtctgtttatctgagactcaaggtgaaagcaaacggttttctatcacaaaaaaagtctcttcgtccaacaatgtaactgttacggagcaagat 26353759  T
Q  132 cttcagttttgccctggtctttctgttcaagca 164  Q
    |||||||||| ||| | | |||||| |||||||    
T  26353758 cttcagtttttcccggatatttctgctcaagca 26353726  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 9816201 - 9816332
Alignment:
Q  9 agcagagaagtaaggatgtctagtgacagagtctgtttatctgagactcaagctgaaagcaaacacttttcaatcagnnnnnnngtctctttgtccaaca 108  Q
    |||| ||||| |||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||| || ||       |||||||  | |||||    
T  9816201 agcaaagaagcaaggatttatggtgacagagtctgtttatctgagactcaaggtgaaagcaaacacttttctatgaggaaaaaagtctcttcattcaaca 9816300  T
Q  109 atgtagctgttgcgcagcaagatcttcagttt 140  Q
    ||||| |||| | | |||||||||||||||||    
T  9816301 atgtaactgtcgtggagcaagatcttcagttt 9816332  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 369
Target Start/End: Original strand, 1718499 - 1718657
Alignment:
Q  211 atgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatggattt 310  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||||||| |||    |||||||||||||||| ||  |||||||||||||||||| |||    
T  1718499 atgaagttatggttttgttaaaagaggaatgcatgaagaatcaagaggagctcgcacgtctggcaagacaacaggaagagatgttacggttaatgggttt 1718598  T
Q  311 gaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaac 369  Q
    |  |  ||||| |||||||||| |||| ||||| ||||||||| || ||| ||||||||    
T  1718599 gtgggagaagaaggatgaagagttgaggcaactactcactagtgttttgaggaatcaac 1718657  T

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