View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_low_13 (Length: 382)
Name: NF11961_low_13
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_low_13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 129536 - 129705
Alignment:
| Q |
213 |
tacccgtcctgtattatgagatttgagaaaaccaaagtcatacccaaaatgagtgaaagcagatacaactgtgaaaattagtattaatcgcaccccctag |
312 |
Q |
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| T |
129536 |
tacccgtcctgtattatgagatttgagaaaaacaaagtcatacccaaaatgagtgaaagcagataaaactgtgaaaattagtattaatcgcaccccctag |
129635 |
T |
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| Q |
313 |
tgaagattgttttctttcccttcacttagccttacccaccaaccccttctcacccctgtctgtcgtgtta |
382 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
129636 |
tgaagattgttttctttcccttcacttaaccttacccaccaaccccttctcacccctgtctgtcgtgtta |
129705 |
T |
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