View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_low_15 (Length: 327)
Name: NF11961_low_15
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 26 - 318
Target Start/End: Complemental strand, 34483933 - 34483638
Alignment:
| Q |
26 |
tcaagagaagaagcttataaactcattcaaattgagattgaagattattggatgattatgaatgaagagtgcctcaagatagaaaacatcccaaggccgg |
125 |
Q |
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| T |
34483933 |
tcaagagaagaagcttataaacttattcaaattgagattgaagattattggataattatgaatgaagagtgcctcaagatagaaaacattccaaggtcgg |
34483834 |
T |
|
| Q |
126 |
tgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgt |
225 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34483833 |
tgcttgaaattattcttaatgtggcacgaataacagagttcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgt |
34483734 |
T |
|
| Q |
226 |
tgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggcta---ttactgctttatgcatctc |
318 |
Q |
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| T |
34483733 |
tgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagtggctacttttactgttttatgcatctc |
34483638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 34448594 - 34448294
Alignment:
| Q |
1 |
atgttgcatgaaacaatatgatatatcaagagaagaagcttataaactcattcaaattgagattgaagattattggatgattatgaatgaagagtgcctc |
100 |
Q |
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|||||||||||| |||||||| || ||| ||||||| |||||||| |||||| | || || || ||||||||| | | |||||||||||||| ||| |
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| T |
34448594 |
atgttgcatgaagcaatatgacatgtcaggagaagaggcttataacttcattcgcaaggaaatcgagaattattggaaggtcatgaatgaagagtgtctc |
34448495 |
T |
|
| Q |
101 |
aagatagaaaacatcccaaggccggtgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaag |
200 |
Q |
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| T |
34448494 |
aagttagacaacatcccaagaccagtgcttgaatttattatgaatgtggcgcgagtgactgagtttgcatacgaaaactttgaggataaatacacaaaac |
34448395 |
T |
|
| Q |
201 |
cagaactgatgaaagattacattgttgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggctat |
300 |
Q |
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|||||||| | |||||||||||||||||||||||| | ||||||||||| ||||||| | | |||||||||||||| |||| |||||||||| |||||| |
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| T |
34448394 |
cagaactgctaaaagattacattgttgcactacttgtggatcctataagcatcgagctaagtgagtagaagaagcaagatcagttataataagtggctat |
34448295 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
34448294 |
t |
34448294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 301
Target Start/End: Complemental strand, 34459826 - 34459527
Alignment:
| Q |
2 |
tgttgcatgaaacaatatgatatatcaagagaagaagcttataaactcattcaaattgagattgaagattattggatgattatgaatgaagagtgcctca |
101 |
Q |
| |
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||||||||||| |||||||| |||||| |||||| |||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||| | |
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| T |
34459826 |
tgttgcatgaagcaatatgacatatcacaagaagaggcttataaactcattctcaaggagattgaagatttatggagagttatgaatgaagagtgcctaa |
34459727 |
T |
|
| Q |
102 |
agatagaaaacatcccaaggccggtgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagc |
201 |
Q |
| |
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| || | |||| |||||||| ||||||||| |||||||| | | || ||| ||| | |||| ||||||| |||||||||||||||||||||| | |
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| T |
34459726 |
aattacaccacattccaaggccagtgcttgaatgtattcttaattttgcgcgaggaactcacttcatatacgaagactttgaggataaatacacaaatcc |
34459627 |
T |
|
| Q |
202 |
agaactgatgaaagattacattgttgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggctatt |
301 |
Q |
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||| ||| | ||||||||||||| |||||| ||| ||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||| ||||||| |
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| T |
34459626 |
agatctgctcaaagattacattgctgcactgcttgtagatcctataagcatcgagcaatgcgagtagaagaagcaagatcagttataataagtggctatt |
34459527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 249
Target Start/End: Complemental strand, 34473805 - 34473618
Alignment:
| Q |
62 |
attgaagattattggatgattatgaatgaagagtgcctcaagatagaaaacatcccaaggccggtgcttgaaattattcttagtgtggcacgaataacag |
161 |
Q |
| |
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|||||||||| ||||||| ||| |||||||||| ||||||| |||| ||||||| | || ||||||||| |||||||| ||||||||||||||| | |
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| T |
34473805 |
attgaagatttttggatggatataaatgaagagttcctcaagttagactacatccccaaccctgtgcttgaatgtattcttaatgtggcacgaataaccg |
34473706 |
T |
|
| Q |
162 |
aattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactacttatagatcctataag |
249 |
Q |
| |
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| T |
34473705 |
agttcacctacgaaaactacgaggataaatacacaaatggggaactgttgaaagactatgttgttgcacttctcatagatccaataag |
34473618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6132203 - 6132428
Alignment:
| Q |
1 |
atgttgcatgaaacaatatgatatatcaagagaagaagcttataaactcattcaaattgagattgaagattattggatgattatgaatgaagagtgcctc |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||| |||||||| |||||||||| | ||||| |||||||||||||| |||||||||||||||| ||| |
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| T |
6132203 |
atgttgcatgaagcaatatgatatgtcacaagaggaagcttacaaactcattctgaaagagatcgaagattattggatagttatgaatgaagagtgtctc |
6132302 |
T |
|
| Q |
101 |
aagatagaaaacatcccaaggccggtgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaag |
200 |
Q |
| |
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|| |||| ||||||||| || ||| | |||| |||| ||| |||||| ||| || | || ||||||||||||||||||||||||||||||||||| | |
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| T |
6132303 |
aaattagactgcatcccaagcccagtggtcgaaagtattgttaatgtggcgcgagtagccgagttcacatacgaaaactttgaggataaatacacaaatg |
6132402 |
T |
|
| Q |
201 |
cagaactgatgaaagattacattgtt |
226 |
Q |
| |
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||| || ||||||| ||||||||| |
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| T |
6132403 |
gggaattgctgaaagactacattgtt |
6132428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 6135912 - 6135987
Alignment:
| Q |
59 |
gagattgaagattattggatgattatgaatgaagagtgcctcaagatagaaaacatcccaaggccggtgcttgaaa |
134 |
Q |
| |
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|||||||| ||| ||||||| |||||||||||||||||||||||| |||| ||| ||||| || |||||||||| |
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| T |
6135912 |
gagattgacgataattggataattatgaatgaagagtgcctcaagttagattgcataccaagaccagtgcttgaaa |
6135987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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