View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_low_16 (Length: 319)
Name: NF11961_low_16
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 36 - 306
Target Start/End: Original strand, 13630968 - 13631262
Alignment:
| Q |
36 |
atatcatgcatctccatataatttatagtaaattatacgtacggtgcatgnnnnnnnaagctatattcaatgcatgttgaacaaggtgattttgggaaag |
135 |
Q |
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| T |
13630968 |
atatcatgcatctccatataatttatagtaaattatacgtacgatgcatgtttttttaagctatacacaatgcatgttgagcaaggtgattttgggaaag |
13631067 |
T |
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| Q |
136 |
ctacaaaatgtagtttttacaaaatcacgattggtcgtga---------------atcgtgat---gaatatgtacgtaaaatttgttacttcaattata |
217 |
Q |
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| T |
13631068 |
ctacaaaatgtagtttttacaaaatcacgattggtcgtgatgattctgacaattcactgtgatatcaaatatgtacgtaaaatttgttactttaattata |
13631167 |
T |
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| Q |
218 |
gtggatcattctctactt------tatatatatagggctctccaatgctaaaaccagcagtgaagtatttgacatatagatcatttggtgctcct |
306 |
Q |
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| T |
13631168 |
gtggatcattttctactttatatatatatatatagggctctccaatgctaaaaccagcagtgaagtatttgacatatagatcatttggtgctcct |
13631262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 36 - 306
Target Start/End: Original strand, 13731380 - 13731674
Alignment:
| Q |
36 |
atatcatgcatctccatataatttatagtaaattatacgtacggtgcatgnnnnnnnaagctatattcaatgcatgttgaacaaggtgattttgggaaag |
135 |
Q |
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| T |
13731380 |
atatcatgcatctccatataatttatagtaaattatacgtacgatgcatgtttttttaagctatacacaatgcatgttgagcaaggtgattttgggaaag |
13731479 |
T |
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| Q |
136 |
ctacaaaatgtagtttttacaaaatcacgattggtcgtga---------------atcgtgat---gaatatgtacgtaaaatttgttacttcaattata |
217 |
Q |
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| T |
13731480 |
ctacaaaatgtagtttttacaaaatcacgattggtcgtgatgattctgacaattcactgtgatatcaaatatgtacgtaaaatttgttactttaattata |
13731579 |
T |
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| Q |
218 |
gtggatcattctctactt------tatatatatagggctctccaatgctaaaaccagcagtgaagtatttgacatatagatcatttggtgctcct |
306 |
Q |
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| T |
13731580 |
gtggatcattttctactttatatatatatatatagggctctccaatgctaaaaccagcagtgaagtatttgacatatagatcatttggtgctcct |
13731674 |
T |
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