View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11961_low_3 (Length: 618)
Name: NF11961_low_3
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 5674649 - 5675241
Alignment:
| Q |
1 |
attcactttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcaatggttttttcgacaaatttattcaccttattgaga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5674649 |
attcattttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcgatggttttttcgacaaatttattcaccttattgaga |
5674748 |
T |
|
| Q |
101 |
gtatgcttagataggagaaaatcatgttcatctattttttctttgtgggtgtaattaccacttgtacttatcacaatatatgagagtagtacaccaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5674749 |
gtatgcttagataggagaaaatcatgttcatctattttttct--gtgggtgtaattaccacttgtacttatcacaatatatgagagtagtacaccaacaa |
5674846 |
T |
|
| Q |
201 |
ggttgcaatgcaatccaactcaagaattatattttatttttcaccaccaccctttacaatatggttcccactttaacatcgtgatgacataatttacaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5674847 |
ggttgcaatgcaatccaactcaagaattatattttatttttcaccaccaccctttacaatatggttcccactttaacatcgtgatgacataatttacaca |
5674946 |
T |
|
| Q |
301 |
gaatcacacaaatgaagcaaaaacaaaactagaaaacatagtactcctgtatttattttcatgacctcaggaaatagagtgtcgtcgattcttgtttggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5674947 |
gaatcacacaaatgaagcaaaaacaaaactagaaaacatagtactcctgtatttattttcatgacctcaggaaatagagtgtcgtcgattcttgtttggt |
5675046 |
T |
|
| Q |
401 |
tttgttttacctttagcagatacaataccctccaaacgtggaaaaggagaaagcttcccaagtttctttgaaaccgaacttataaacgatttacgaggta |
500 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5675047 |
tttattttacctttagcagatacaataccatccaaacgtggaaaaggagaaagcttcccaagtttctttgaaaccgaacttataaacgatttacgaggta |
5675146 |
T |
|
| Q |
501 |
gtggaggcttatcagcagaatgagaatgagaaggtgaagcatttgcaataggactgttaaccgttgattttactgttgatttaacagttgattta |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5675147 |
gtggaggcttatcagcagaatgagaatgagaaggtgaagcatttgcaataggactgttaaccgttgattttactgttgatttaacagttgattta |
5675241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University