View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_low_4 (Length: 578)
Name: NF11961_low_4
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 577
Target Start/End: Original strand, 36304631 - 36305195
Alignment:
| Q |
17 |
cactctctccaggaaaagaacctgagttcaattcttagagtcgcccatttggttggcaccggtgtaaaaagtgggcattcctctgtcgatttgatgatta |
116 |
Q |
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| T |
36304631 |
cactctctccaggaaaagaacctgagtttaattcttagagttgcccatttggttggcaccggtataaaaagtgggcgttcctctgtcgatttgacgatta |
36304730 |
T |
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| Q |
117 |
ctcttagtgggctcaaaagacttaaactgaggataccttgaggcacctactgatgtcaaagccctaattaccacagtggattagccgaaaaataagaatt |
216 |
Q |
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| T |
36304731 |
ctcttagtgggcgcaaaagacttaaactgaggataccttgaggcacctactgatgtcaaagccctaattaccacagtggattagccgaaaaataagaatt |
36304830 |
T |
|
| Q |
217 |
ggnnnnnnnnn----cgcaataaataatggtagtttctaagacaaattgttannnnnnnnatcaaaatcaggattttcataggcatccatggctctacaa |
312 |
Q |
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| T |
36304831 |
ggttttttttttttccgcaataaataatggtagtttctaagacaaattgttattttttttatcaaaatcaggattttcataggcatccatggctctacaa |
36304930 |
T |
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| Q |
313 |
caattagatcaagaggttccattgcaagaacaagaagctacattttctcaaccaagcaagcaaacctcaatactctcacttaccctagatgagttccaat |
412 |
Q |
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| T |
36304931 |
caattagatcaagaggttccattgcaagaacaagaagctacattttctcaaccaagcaagcaaacctcaatactctcacttaccctagatgagttccaat |
36305030 |
T |
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| Q |
413 |
gcaagagtggaaagagctttagttccctcaacatggatgaattccttgccagcatttggagttccaatgatgaagctaccactcaaactcataatactaa |
512 |
Q |
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| T |
36305031 |
gcaagagtggaaagagctttagttccctcaacatggatgaattccttgccagcatttggagttccaatgatgaagctaccactcatactcataatactaa |
36305130 |
T |
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| Q |
513 |
aaatgttgtaacaacacaacataccatttcccaacaatttggtaattcattctctgctcctcctc |
577 |
Q |
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| T |
36305131 |
aaatgttgtaacaacacaacacaccatttcccaacaatttggtaattcattctctgtccctcctc |
36305195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 384 - 562
Target Start/End: Original strand, 36320552 - 36320733
Alignment:
| Q |
384 |
actctcacttaccctagatgagttccaatgcaagagtggaaagagctttagttccctcaacatggatgaattccttgccagcatttggagttccaatgat |
483 |
Q |
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| T |
36320552 |
actctcactcaccctggatgatttccaatgcaataatgataagaactttagctccctcaacatggatgagttcctagctagcatttggagttccaatgat |
36320651 |
T |
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| Q |
484 |
gaagctaccactcaaactc---ataatactaaaaatgttgtaacaacacaacataccatttcccaacaatttggtaattcat |
562 |
Q |
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| T |
36320652 |
gaagatactgctcaaactcacaacaatactgaaagtgttgcaacagcagaacacaccatttcccaacagcttggtaattcat |
36320733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 35566638 - 35566723
Alignment:
| Q |
333 |
attgcaagaacaagaag---ctacattttctcaaccaagcaagcaaacctcaatactctcacttaccctagatgagttccaatgca |
415 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| |||| ||||| ||||||||| ||||| ||||| |||||||||| |
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| T |
35566638 |
attgcaagaacaagaagaatctacattttctcaaccgagcaatcaaaactcaacactctcactcacccttgatgatttccaatgca |
35566723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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