View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_low_5 (Length: 567)
Name: NF11961_low_5
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 209 - 548
Target Start/End: Complemental strand, 55272319 - 55271980
Alignment:
| Q |
209 |
acagttgagggagaattgcttcaaaagggttcgacaagacagaagcagattgctttggaaatgtaggctctcttcctccgatgatgactcctctcgtctt |
308 |
Q |
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| T |
55272319 |
acagttgagggagaattgcttcaaaagggttcgacaagacagaagcagattgctttggaaatgtaggctctcttcctccgatgatgaatcctctcgtctt |
55272220 |
T |
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| Q |
309 |
cttcataatcaggatgagttggatatcgtgttccgtgatattgtatctgatgaattgaataagatcaataatgatgacaatgatcttttatggaacgatg |
408 |
Q |
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| T |
55272219 |
cttcataatcaggatgagttggatatcgtgttccgtgatattgtatctgatgaattgaataagatcaataatgatgacaatgatcttttatggaacgatg |
55272120 |
T |
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| Q |
409 |
acctcaaagcagctcatgagggtgattgccaagacattcttcttgaaatgcaaaacttattttatcaagacctcgattctcatattgatacttgggaaga |
508 |
Q |
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| T |
55272119 |
acctcaaagcagctcatgagggtgattgccaagacattcttcttgaaatgcaaaacttattttatcaagacctcgattctcatattgatacttgggaaga |
55272020 |
T |
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| Q |
509 |
tgaagttgatcactacttggctcgtgctgtttatgaccat |
548 |
Q |
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| T |
55272019 |
tgaagttgatcactacttggctcgtgctgtttatgaccat |
55271980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 55272535 - 55272385
Alignment:
| Q |
1 |
tgaatgaatagaagtgtgggaagtggaagctgcgatgcgatg-----gaggaaataggcacatcaacaacagcagtgaagaagaaggcgatgttgcggcc |
95 |
Q |
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| T |
55272535 |
tgaatgaatagaagtgtgggaagtggaagctgcgatgcgatgcgatggaggaaataggcacatcaacaacagcag---agaagaaggcgatgttgcggcc |
55272439 |
T |
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| Q |
96 |
atctttaaaatccgattctgaattcaacaattaccaactctggaaacaaaaggt |
149 |
Q |
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| T |
55272438 |
gtctttaaaatccgattctgaattcaacaattaccaactctggaaacaaaaggt |
55272385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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