View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_low_8 (Length: 504)
Name: NF11961_low_8
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 40610477 - 40610783
Alignment:
| Q |
1 |
aatttggttcagcaaaactcaaacaaacaaaaggggtagctattaacagagaaagagaagaattggcaactatt-aacttggtgctaacaacnnnnnnnn |
99 |
Q |
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| T |
40610477 |
aatttggttcagcaaaactcaaacaaacaaaaggggtagctattaacagagaaagagaagaattggcaactatttaacttggtgctgacaacaaaaaaa- |
40610575 |
T |
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| Q |
100 |
ggatcaaactttatgaacttgtaatcttgttcaataccttaaaattttctttatttgttnnnnnnnn-caaacttgtactattgagtcnnnnnnngtaaa |
198 |
Q |
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| T |
40610576 |
ggatcaaactttatgaacttgtaatcttgtttaataccttaaaagtttctttctttgttaaaaaaaaacaaacttgtactatt-agtcaaaaaa-gtaaa |
40610673 |
T |
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| Q |
199 |
gtttgattaagaaaaagattagaaactttgccaaaatagtccaaccaaaatattgaaggaatatatattaaagggtagtgggaaatacaataattgcaca |
298 |
Q |
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| T |
40610674 |
gtttgattaagaaaaagattagaaactttgccaaaatagtccaaccaaactattgaaggaatatatattaaagggtagtgggaaatccaataattgcaca |
40610773 |
T |
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| Q |
299 |
taccttattg |
308 |
Q |
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| T |
40610774 |
taccttattg |
40610783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 397 - 484
Target Start/End: Original strand, 40610886 - 40610973
Alignment:
| Q |
397 |
gcataaagtttggtcaccttcatatgtcatccaaccaacccagtagagcacatctgagaatgaatgaattggattcagttctattgtt |
484 |
Q |
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| T |
40610886 |
gcataaagtttggtcaccttcatatgtcatccaaccaacacagtagagcacatctgagaatgaatgaattggattcagttctattgtt |
40610973 |
T |
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