View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11962_high_4 (Length: 372)
Name: NF11962_high_4
Description: NF11962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11962_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 34101730 - 34101388
Alignment:
| Q |
18 |
atatgtttctttcggcggtggcaaaacagaattagccgtagaattttcagcgaatcttccaacaccggagtttgtagtggaaatcaaatctccaccgtcc |
117 |
Q |
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| T |
34101730 |
atatgtttctttcggcggtggcaaaacagaattagccgtagaattttcagcgaatcttccaacaccggagtttgcagtggaaatcaaatctccaccgtcc |
34101631 |
T |
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| Q |
118 |
gtttcatcagaacttccaacaacaacaacaggacatttgcaatggcgaacgcaatactcgcccccttccaacgataagcgcgctgaggttgagagtgttg |
217 |
Q |
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| T |
34101630 |
gtttcatcagaacttcccacaacaccaacaggacattcgcaatggcgaacgcaatactcgcccccttccaacgataagcgcgctgaggttgagactgttg |
34101531 |
T |
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| Q |
218 |
atctctaagcagagacgctccttgatttcatgatccatcacaatatggagattgtgaggaatctgtgcttgaagtaacggtttcgcaaaatcgttaagtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
34101530 |
atctctaagcagagacgctccttgatttcatgatccatcacaatgtggagattgtaaggaatctgtgcttgaagtaacgatttcgcaaaatcgtcaagtt |
34101431 |
T |
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| Q |
318 |
tggaaatcgtgtacacgtggaagtagtttttcatcttcttcat |
360 |
Q |
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| T |
34101430 |
tggaaatcgtgtacacgtggaagtagtttttcatcttcttcat |
34101388 |
T |
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