View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11962_high_7 (Length: 348)

Name: NF11962_high_7
Description: NF11962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11962_high_7
NF11962_high_7
[»] chr8 (3 HSPs)
chr8 (22-114)||(31670896-31670988)
chr8 (283-343)||(31671199-31671259)
chr8 (32-107)||(29126334-29126408)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 31670896 - 31670988
Alignment:
Q  22 aagttagaatgtaattcaaaacatgagacaaagaaattgagtaaaagagttttagaaatattttttgtttctatagtgttgatatcttgtgag 114  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31670896 aagttcgaatgtaattccaaacatgagacaaagaaattgagtaaaagagttttagaaatattttttgtttctacagtgttgatatcttgtgag 31670988  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 31671199 - 31671259
Alignment:
Q  283 cacatcaaagtctcgactcactttccctatgttagttctttctattgtttttcttctctct 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  31671199 cacatcaaagtctcgactcactttccctatgttagttctttctattatttttcttcgctct 31671259  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 29126334 - 29126408
Alignment:
Q  32 gtaattcaaaacatgagacaaagaaattgagtaaaagagttttagaaatattttttgtttctatagtgttgatatc 107  Q
    |||||| |||||| || ||||| | ||||||||||| |  ||||||||||||| ||||||||| ||||||||||||    
T  29126334 gtaatttaaaacacgaaacaaaaatattgagtaaaa-atatttagaaatatttgttgtttctagagtgttgatatc 29126408  T

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