View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11962_low_1 (Length: 648)
Name: NF11962_low_1
Description: NF11962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11962_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 23128602 - 23127969
Alignment:
| Q |
1 |
tatgtctccaaaatcaaggagacccaaatcctttcaccaatctaccttaccaaagtggggaactcatatatgcaccaaaaccgccgttattgataccgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23128602 |
tatgtctccaaaatcaaggagacccaaatcctttcaccaatctaccttaccaaagtggggaactcatatatgcaccaaaaccgccgttattgataccgcc |
23128503 |
T |
|
| Q |
101 |
ggtgcttcaatcaactgcttcggtgaccgccgttcttctagccctaactcctacgaatcaactgacgccaaaggaatcgcggatgtgagagagaagctca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
23128502 |
ggtgcttcaatcaactgcttcggtgaccgccgttcttctagccctaactcctacgaatcaactgatgccaaaggaatcgcggttgtgagagagaagctca |
23128403 |
T |
|
| Q |
201 |
tgcatgaactaaaaactgatttgaaaaccgccactgatagattgaagtacgcgattttgaacggagaaagcaaagctccggttacctcatccgataatgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23128402 |
tgcatgaactaaaaactgatttgaaaactgccactgatagattgaagtacgcgtttttgaatggagaaagcaaagctccgattacctcatccgataatgc |
23128303 |
T |
|
| Q |
301 |
aaatggtgatttcacttctctgtcgagaattgaaattgatgccgttggccatggtttcgtcgatcctatttcgtcaaggttgagaagtaatattcctagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23128302 |
aaatggtgatttcacttctctgtcgagaattgaaattgacgccgctggccatggtttcgtcgatcctatttcgtcaaggttgagaagtaatattcctagt |
23128203 |
T |
|
| Q |
401 |
aacgaggttgaaacaccgaaattttctcttcagctcttgaggaagcaaatcgatgaagatttcatggtgttgacaggttgtcggcctcggaaaaggccca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23128202 |
aacgaggttgaaacaccgaaattttctcttcagctcttgaggaaggaaatcgatgaagatttcatggtgttgacaggttgtcggcctcggaaaaggccca |
23128103 |
T |
|
| Q |
501 |
ccaagaggcccagagttgttcagaaagagttagacgttagttgcatg-tttcccttttaatgaataattaatctctcaatatattactgcttttgtttaa |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23128102 |
ccaagaggcccagagttgttcagaaagagttagacgttagttgcatgttttcccttttaatgaataattaatctctcaatatattactgcttttgtttaa |
23128003 |
T |
|
| Q |
600 |
tttatcattgataataaatacctaatttgttttt |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23128002 |
tttatcattgataataaatacctaatttgttttt |
23127969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 23096467 - 23096371
Alignment:
| Q |
418 |
gaaattttctcttcagctcttgaggaagcaaatcgatgaagatttcatggtgttgacaggttgtcggcctcggaaaaggcccaccaagaggcccaga |
514 |
Q |
| |
|
|||||||||| ||||||| || | |||| ||||||| ||||||||| ||| ||| | || || ||||||||||||||||||| |||||||||||| |
|
|
| T |
23096467 |
gaaattttctgttcagcttttaacgaaggaaatcgaggaagatttcgtggcgtttatgggccgtgggcctcggaaaaggcccactaagaggcccaga |
23096371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University