View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11962_low_3 (Length: 539)

Name: NF11962_low_3
Description: NF11962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11962_low_3
NF11962_low_3
[»] chr3 (21 HSPs)
chr3 (148-529)||(40903443-40903824)
chr3 (229-397)||(40898848-40899016)
chr3 (255-397)||(40879949-40880091)
chr3 (470-516)||(40899248-40899294)
chr3 (124-166)||(25948882-25948926)
chr3 (120-168)||(11313791-11313841)
chr3 (136-167)||(11507484-11507515)
chr3 (137-171)||(2731827-2731861)
chr3 (130-168)||(11251996-11252034)
chr3 (138-168)||(11493372-11493402)
chr3 (126-168)||(15812820-15812862)
chr3 (127-168)||(2620053-2620094)
chr3 (137-166)||(7928470-7928499)
chr3 (139-168)||(10690274-10690303)
chr3 (125-171)||(16789027-16789075)
chr3 (137-166)||(40993345-40993374)
chr3 (139-171)||(4469865-4469897)
chr3 (139-171)||(7614427-7614459)
chr3 (140-168)||(14840304-14840332)
chr3 (126-166)||(25064929-25064969)
chr3 (405-468)||(40899125-40899188)
[»] chr4 (11 HSPs)
chr4 (5-171)||(49652860-49653016)
chr4 (137-168)||(903940-903971)
chr4 (137-168)||(22440610-22440641)
chr4 (137-168)||(36635342-36635373)
chr4 (137-168)||(40613468-40613499)
chr4 (125-168)||(7970537-7970582)
chr4 (137-171)||(13134465-13134499)
chr4 (121-168)||(18576029-18576078)
chr4 (140-169)||(35161053-35161082)
chr4 (140-168)||(8423731-8423759)
chr4 (138-166)||(40179647-40179675)
[»] chr2 (12 HSPs)
chr2 (117-168)||(21782808-21782859)
chr2 (125-171)||(18622621-18622669)
chr2 (124-168)||(2665885-2665929)
chr2 (125-168)||(2331812-2331855)
chr2 (137-168)||(20242737-20242768)
chr2 (137-168)||(21616780-21616811)
chr2 (137-171)||(17520080-17520114)
chr2 (136-166)||(28677929-28677959)
chr2 (137-171)||(31808092-31808126)
chr2 (137-165)||(5367213-5367241)
chr2 (107-166)||(28412370-28412427)
chr2 (137-165)||(28524447-28524475)
[»] chr8 (13 HSPs)
chr8 (137-171)||(4786348-4786382)
chr8 (137-171)||(11803274-11803308)
chr8 (137-168)||(26902185-26902216)
chr8 (137-168)||(34897103-34897134)
chr8 (124-171)||(14634136-14634185)
chr8 (137-166)||(11927096-11927125)
chr8 (139-168)||(14134717-14134746)
chr8 (131-168)||(37283814-37283851)
chr8 (138-171)||(38079014-38079047)
chr8 (140-168)||(3025569-3025597)
chr8 (137-165)||(8847277-8847305)
chr8 (125-168)||(14731730-14731771)
chr8 (106-167)||(34451014-34451077)
[»] chr7 (14 HSPs)
chr7 (131-168)||(29787373-29787410)
chr7 (107-168)||(7328669-7328732)
chr7 (124-168)||(17307911-17307957)
chr7 (137-168)||(17851449-17851480)
chr7 (137-168)||(22602720-22602751)
chr7 (137-168)||(22868060-22868091)
chr7 (137-171)||(12278850-12278884)
chr7 (137-171)||(27732249-27732283)
chr7 (126-168)||(30731055-30731097)
chr7 (138-171)||(27093424-27093457)
chr7 (138-171)||(27184844-27184877)
chr7 (139-168)||(39138462-39138491)
chr7 (137-165)||(640134-640162)
chr7 (138-170)||(10377523-10377555)
[»] chr6 (13 HSPs)
chr6 (129-171)||(32511666-32511710)
chr6 (139-171)||(9658894-9658926)
chr6 (136-168)||(13360381-13360413)
chr6 (137-168)||(7265603-7265634)
chr6 (137-168)||(9025504-9025535)
chr6 (137-168)||(11591880-11591911)
chr6 (137-168)||(19040370-19040401)
chr6 (137-168)||(26562707-26562738)
chr6 (129-168)||(31579227-31579266)
chr6 (125-164)||(34290075-34290114)
chr6 (137-166)||(7027262-7027291)
chr6 (126-166)||(1532260-1532299)
chr6 (137-173)||(24833243-24833279)
[»] scaffold0123 (1 HSPs)
scaffold0123 (137-168)||(44535-44566)
[»] chr5 (7 HSPs)
chr5 (137-168)||(6471899-6471930)
chr5 (137-168)||(24273040-24273071)
chr5 (137-168)||(24389143-24389174)
chr5 (137-168)||(39758290-39758321)
chr5 (137-168)||(41091267-41091298)
chr5 (140-168)||(23016002-23016030)
chr5 (140-168)||(28588687-28588715)
[»] chr1 (25 HSPs)
chr1 (137-168)||(1864890-1864921)
chr1 (137-168)||(7918221-7918252)
chr1 (137-168)||(10233271-10233302)
chr1 (137-168)||(19324580-19324611)
chr1 (137-168)||(25098565-25098596)
chr1 (137-168)||(25361904-25361935)
chr1 (137-168)||(30749858-30749889)
chr1 (137-168)||(30771309-30771340)
chr1 (137-168)||(34371731-34371762)
chr1 (137-168)||(40181889-40181920)
chr1 (137-168)||(44482248-44482279)
chr1 (129-171)||(2288169-2288211)
chr1 (125-168)||(6427368-6427413)
chr1 (137-171)||(12713337-12713371)
chr1 (137-171)||(12717428-12717462)
chr1 (137-171)||(13436473-13436507)
chr1 (137-171)||(13997898-13997932)
chr1 (125-171)||(15641028-15641074)
chr1 (137-167)||(17705596-17705626)
chr1 (124-166)||(1486704-1486748)
chr1 (124-166)||(5944303-5944347)
chr1 (121-166)||(113319-113366)
chr1 (138-166)||(5898277-5898305)
chr1 (140-168)||(34298454-34298482)
chr1 (140-168)||(36878479-36878507)
[»] scaffold0171 (1 HSPs)
scaffold0171 (124-166)||(23440-23484)
[»] scaffold0044 (1 HSPs)
scaffold0044 (140-168)||(53198-53226)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 148 - 529
Target Start/End: Original strand, 40903443 - 40903824
Alignment:
Q  148 cactgaattatgtgattttcttaactgaatcccttgtgtccggtgtttgtattcgtgtttcatatcatactacttactaactgaatcccttgattgtgtt 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40903443 cactgaattatgtgattttcttaactgaatcccttgtgtccggtgtttgtactcgtgtttcatatcatactacttactaactgaatcccttgattgtgtt 40903542  T
Q  248 tttgaaccagctgcggttgcatgggaggcggggaagccactggtgatggaagaagtagaggtggcgccaccgcaggccggtgaagtccgtctcaagatac 347  Q
    || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40903543 ttggaaccagctgcggttgcatgggaagcggggaagccgctggtgatggaagaagtagaggtggctccaccgcaggccggtgaagtccgtctcaagatac 40903642  T
Q  348 tcttcacctccctttgtcacactgatgtttacttctgggaagctaaggtannnnnnngattacataacacggcgggtgcttagttttcttacacaaaagt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  40903643 tcttcacctccctttgtcacactgatgtttacttctgggaagctaaggtatttttttgattacataacacggcgggtgcttagttttcttacacaaaagt 40903742  T
Q  448 taatttacgtaaaattcttcttaggttttcatgttttgttttgcattgcagtgatttaatatggttttcttgttttcctttg 529  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40903743 taatttatgtaaaattcttcttaggttttcatgttctgttttgcattgcagtgatttaatatggttttcttgttttcctttg 40903824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 229 - 397
Target Start/End: Original strand, 40898848 - 40899016
Alignment:
Q  229 tgaatcccttgattgtgtttttgaaccagctgcggttgcatgggaggcggggaagccactggtgatggaagaagtagaggtggcgccaccgcaggccggt 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40898848 tgaatcccttgattgtgtttttgaaccagctgcggttgcatgggaggcggggaagccactggtgatggaagaagtagaggtggcaccaccgcaggccggt 40898947  T
Q  329 gaagtccgtctcaagatactcttcacctccctttgtcacactgatgtttacttctgggaagctaaggta 397  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40898948 gaagtccgtctcaagatactcttcacctccctttgtcacaccgatgtttacttctgggaagctaaggta 40899016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 255 - 397
Target Start/End: Original strand, 40879949 - 40880091
Alignment:
Q  255 cagctgcggttgcatgggaggcggggaagccactggtgatggaagaagtagaggtggcgccaccgcaggccggtgaagtccgtctcaagatactcttcac 354  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40879949 cagctgcggttgcatgggaggcagggaagccactggtgatggaggaagtggaggtggcgccaccgcaggccggtgaagtccgtctcaagatactcttcac 40880048  T
Q  355 ctccctttgtcacactgatgtttacttctgggaagctaaggta 397  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  40880049 ctctctttgtcacactgatgtttacttctgggaagctaaggta 40880091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 516
Target Start/End: Original strand, 40899248 - 40899294
Alignment:
Q  470 aggttttcatgttttgttttgcattgcagtgatttaatatggttttc 516  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  40899248 aggttttgatgttctgttgtgcattgcagtgatttaatatggttttc 40899294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 25948882 - 25948926
Alignment:
Q  124 cgacacgacaccaaca--tataattacactgaattatgtgatttt 166  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  25948882 cgacacgacaccaacacttataattacactgaattatgtgatttt 25948926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 11313791 - 11313841
Alignment:
Q  120 aacacgacacgacaccaaca--tataattacactgaattatgtgattttct 168  Q
    ||||||||||||||| ||||  |||||||||||| ||||||||||||||||    
T  11313791 aacacgacacgacactaacacatataattacactaaattatgtgattttct 11313841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 11507484 - 11507515
Alignment:
Q  136 aacatataattacactgaattatgtgattttc 167  Q
    ||||||||||||||||||||||||||||||||    
T  11507484 aacatataattacactgaattatgtgattttc 11507515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 2731861 - 2731827
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    ||||||||||||||| |||||||||||||||||||    
T  2731861 acatataattacacttaattatgtgattttcttaa 2731827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 11252034 - 11251996
Alignment:
Q  130 gacaccaacatataattacactgaattatgtgattttct 168  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  11252034 gacaccgacacataattacactgaattatgtgattttct 11251996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 11493372 - 11493402
Alignment:
Q  138 catataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||||    
T  11493372 catataattacactgaattatgtgattttct 11493402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 15812820 - 15812862
Alignment:
Q  126 acacgacaccaacatataattacactgaattatgtgattttct 168  Q
    ||||||||||  |||||||||||||||| ||||||||||||||    
T  15812820 acacgacaccggcatataattacactgagttatgtgattttct 15812862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 2620053 - 2620094
Alignment:
Q  127 cacgacaccaacatataattacactgaattatgtgattttct 168  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||    
T  2620053 cacgacaccaacacatagttacacttaattatgtgattttct 2620094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 7928499 - 7928470
Alignment:
Q  137 acatataattacactgaattatgtgatttt 166  Q
    ||||||||||||||||||||||||||||||    
T  7928499 acatataattacactgaattatgtgatttt 7928470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 10690274 - 10690303
Alignment:
Q  139 atataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||    
T  10690274 atataattacactgaattatgtgattttct 10690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 16789075 - 16789027
Alignment:
Q  125 gacacgacaccaaca--tataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||  ||||||||||||||||||| ||||||| ||||    
T  16789075 gacacgacaccaacacttataattacactgaattatatgatttttttaa 16789027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 40993345 - 40993374
Alignment:
Q  137 acatataattacactgaattatgtgatttt 166  Q
    ||||||||||||||||||||||||||||||    
T  40993345 acatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 4469897 - 4469865
Alignment:
Q  139 atataattacactgaattatgtgattttcttaa 171  Q
    ||||| |||||||||||||||||||||||||||    
T  4469897 atatacttacactgaattatgtgattttcttaa 4469865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 7614427 - 7614459
Alignment:
Q  139 atataattacactgaattatgtgattttcttaa 171  Q
    ||||||||| |||||||||||||||||||||||    
T  7614427 atataattatactgaattatgtgattttcttaa 7614459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 14840304 - 14840332
Alignment:
Q  140 tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||    
T  14840304 tataattacactgaattatgtgattttct 14840332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 25064969 - 25064929
Alignment:
Q  126 acacgacaccaacatataattacactgaattatgtgatttt 166  Q
    |||||| ||||||| ||||||||||| ||||||||||||||    
T  25064969 acacgataccaacacataattacactaaattatgtgatttt 25064929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 468
Target Start/End: Original strand, 40899125 - 40899188
Alignment:
Q  405 gattacataacacggcggg-tgcttagttttcttacacaaaagttaatttacgtaaaattcttct 468  Q
    ||||||||||||||  ||| |||||||||| || ||| ||||||||||||| |||||||||||||    
T  40899125 gattacataacacgttggggtgcttagttt-ctaacaaaaaagttaatttatgtaaaattcttct 40899188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 49652860 - 49653016
Alignment:
Q  5 ggagatatatataaagaaatgcatgttatcatatcatatcatagtatcacataataactgagctacgacactccttaaattaggcatgttccgatgtcgt 104  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  49652860 ggagatatatataaagaaatgcatgttatc----------atagtatcacataataagtgagctacaacactccttaaattaggcatgttccgatgtcgt 49652949  T
Q  105 atcgtgttcgataccaacacgacacgacaccaacatataattacactgaattatgtgattttcttaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  49652950 atcgtgttcgataccaacacgacacgacaccaacatataattatactgaattatctgattttcttaa 49653016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 903971 - 903940
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  903971 acatataattacactgaattatgtgattttct 903940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 22440610 - 22440641
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  22440610 acatataattacactgaattatgtgattttct 22440641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 36635373 - 36635342
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  36635373 acatataattacactgaattatgtgattttct 36635342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 40613499 - 40613468
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  40613499 acatataattacactgaattatgtgattttct 40613468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 7970582 - 7970537
Alignment:
Q  125 gacacgacaccaa--catataattacactgaattatgtgattttct 168  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||    
T  7970582 gacacgacaccaaaacatataattacactgaattatatgattttct 7970537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 13134499 - 13134465
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    ||||||||||||||| |||||||||||||||||||    
T  13134499 acatataattacactaaattatgtgattttcttaa 13134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 18576029 - 18576078
Alignment:
Q  121 acacgacacgacaccaaca--tataattacactgaattatgtgattttct 168  Q
    |||||||| ||||||||||  ||||||||||| |||||||||||||||||    
T  18576029 acacgacatgacaccaacacatataattacaccgaattatgtgattttct 18576078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 35161082 - 35161053
Alignment:
Q  140 tataattacactgaattatgtgattttctt 169  Q
    ||||||||||||||||||||||||||||||    
T  35161082 tataattacactgaattatgtgattttctt 35161053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 8423731 - 8423759
Alignment:
Q  140 tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||    
T  8423731 tataattacactgaattatgtgattttct 8423759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 40179647 - 40179675
Alignment:
Q  138 catataattacactgaattatgtgatttt 166  Q
    |||||||||||||||||||||||||||||    
T  40179647 catataattacactgaattatgtgatttt 40179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 21782808 - 21782859
Alignment:
Q  117 accaacacgacacgacaccaacatataattacactgaattatgtgattttct 168  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||||||||    
T  21782808 accaacacaacacgacaccggcacataattacactgaattatgtgattttct 21782859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 18622669 - 18622621
Alignment:
Q  125 gacacgacaccaaca--tataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  18622669 gacacgacaccaacacgtataattacactgaattatgtgattttattaa 18622621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 2665885 - 2665929
Alignment:
Q  124 cgacacgacaccaacatataattacactgaattatgtgattttct 168  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||    
T  2665885 cgacacaacacccacatataattacactaaattatgtgattttct 2665929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 2331855 - 2331812
Alignment:
Q  125 gacacgacaccaacatataattacactgaattatgtgattttct 168  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||    
T  2331855 gacacgacaccgacacataaatacactgaattatgtgattttct 2331812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 20242737 - 20242768
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  20242737 acatataattacactgaattatgtgattttct 20242768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 21616811 - 21616780
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  21616811 acatataattacactgaattatgtgattttct 21616780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 17520080 - 17520114
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    |||||| ||||||||||||||||||||||||||||    
T  17520080 acatatgattacactgaattatgtgattttcttaa 17520114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 28677959 - 28677929
Alignment:
Q  136 aacatataattacactgaattatgtgatttt 166  Q
    |||||||||||||||||||||||||||||||    
T  28677959 aacatataattacactgaattatgtgatttt 28677929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 31808126 - 31808092
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||||||||||||||||| ||||    
T  31808126 acatataattacactgaattatgtgattttgttaa 31808092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 5367241 - 5367213
Alignment:
Q  137 acatataattacactgaattatgtgattt 165  Q
    |||||||||||||||||||||||||||||    
T  5367241 acatataattacactgaattatgtgattt 5367213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 28412427 - 28412370
Alignment:
Q  107 cgtgttcgataccaacacgacacgacaccaacatataattacactgaattatgtgatttt 166  Q
    ||||| ||| ||||||||| |||  |||| ||| ||||||||||||||||||||||||||    
T  28412427 cgtgtccgacaccaacacggcac--caccgacacataattacactgaattatgtgatttt 28412370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 28524475 - 28524447
Alignment:
Q  137 acatataattacactgaattatgtgattt 165  Q
    |||||||||||||||||||||||||||||    
T  28524475 acatataattacactgaattatgtgattt 28524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 4786348 - 4786382
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||||||||||||||||||||||    
T  4786348 acatataattacactgaattatgtgattttcttaa 4786382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 11803308 - 11803274
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||||||||||||||||||||||    
T  11803308 acatataattacactgaattatgtgattttcttaa 11803274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 26902185 - 26902216
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  26902185 acatataattacactgaattatgtgattttct 26902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 34897134 - 34897103
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  34897134 acatataattacactgaattatgtgattttct 34897103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 14634136 - 14634185
Alignment:
Q  124 cgacacgacaccaaca--tataattacactgaattatgtgattttcttaa 171  Q
    ||||||||||||||||  ||||||||||||||||||| | ||||||||||    
T  14634136 cgacacgacaccaacaaatataattacactgaattatataattttcttaa 14634185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 11927096 - 11927125
Alignment:
Q  137 acatataattacactgaattatgtgatttt 166  Q
    ||||||||||||||||||||||||||||||    
T  11927096 acatataattacactgaattatgtgatttt 11927125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 14134746 - 14134717
Alignment:
Q  139 atataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||    
T  14134746 atataattacactgaattatgtgattttct 14134717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 37283814 - 37283851
Alignment:
Q  131 acaccaacatataattacactgaattatgtgattttct 168  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  37283814 acaccgacacataattacactgaattatgtgattttct 37283851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 38079047 - 38079014
Alignment:
Q  138 catataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||||| |||||||||||||||    
T  38079047 catataattacactgaatcatgtgattttcttaa 38079014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 3025597 - 3025569
Alignment:
Q  140 tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||    
T  3025597 tataattacactgaattatgtgattttct 3025569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 8847305 - 8847277
Alignment:
Q  137 acatataattacactgaattatgtgattt 165  Q
    |||||||||||||||||||||||||||||    
T  8847305 acatataattacactgaattatgtgattt 8847277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 14731771 - 14731730
Alignment:
Q  125 gacacgacaccaacatataattacactgaattatgtgattttct 168  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||    
T  14731771 gacacgacac--acatataattacactaaattatgtgattttct 14731730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 34451014 - 34451077
Alignment:
Q  106 tcgtgttcgataccaacacgacacgacaccaaca--tataattacactgaattatgtgattttc 167  Q
    |||||| ||| ||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||    
T  34451014 tcgtgtccgacaccgacacgacacgacaccgacacatataattacactgcattttgtgattttc 34451077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 29787373 - 29787410
Alignment:
Q  131 acaccaacatataattacactgaattatgtgattttct 168  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  29787373 acaccaacacataattacactgaattatgtgattttct 29787410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 7328669 - 7328732
Alignment:
Q  107 cgtgttcgataccaacacgacacgacaccaaca--tataattacactgaattatgtgattttct 168  Q
    ||||| ||| ||||||||||||||||||| |||  |||||||||||| |||||||| |||||||    
T  7328669 cgtgtccgacaccaacacgacacgacaccgacacatataattacactaaattatgttattttct 7328732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 17307957 - 17307911
Alignment:
Q  124 cgacacgacaccaaca--tataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||    
T  17307957 cgacacgacaccaacacatataattacactgaattatgttattttct 17307911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 17851480 - 17851449
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  17851480 acatataattacactgaattatgtgattttct 17851449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 22602720 - 22602751
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  22602720 acatataattacactgaattatgtgattttct 22602751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 22868091 - 22868060
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  22868091 acatataattacactgaattatgtgattttct 22868060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 12278884 - 12278850
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||||||||||| ||||||||||    
T  12278884 acatataattacactgaattatgtcattttcttaa 12278850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 27732249 - 27732283
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||||||||||| ||||||||||    
T  27732249 acatataattacactgaattatgtaattttcttaa 27732283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 30731097 - 30731055
Alignment:
Q  126 acacgacaccaacatataattacactgaattatgtgattttct 168  Q
    |||||||||| ||| | ||||||||||||||||||||||||||    
T  30731097 acacgacaccgacacacaattacactgaattatgtgattttct 30731055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 27093424 - 27093457
Alignment:
Q  138 catataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||| |||||||||||||||||||    
T  27093424 catataattacactaaattatgtgattttcttaa 27093457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 27184877 - 27184844
Alignment:
Q  138 catataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||| |||||||||||||||||||    
T  27184877 catataattacactaaattatgtgattttcttaa 27184844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 39138491 - 39138462
Alignment:
Q  139 atataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||    
T  39138491 atataattacactgaattatgtgattttct 39138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 640162 - 640134
Alignment:
Q  137 acatataattacactgaattatgtgattt 165  Q
    |||||||||||||||||||||||||||||    
T  640162 acatataattacactgaattatgtgattt 640134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 10377555 - 10377523
Alignment:
Q  138 catataattacactgaattatgtgattttctta 170  Q
    ||||||||||||||||||||| |||||||||||    
T  10377555 catataattacactgaattatatgattttctta 10377523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 32511666 - 32511710
Alignment:
Q  129 cgacaccaaca--tataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  32511666 cgacaccaacacttataattacactgaattatgtgattttcttaa 32511710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 9658926 - 9658894
Alignment:
Q  139 atataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||||||||||||||||||||    
T  9658926 atataattacactgaattatgtgattttcttaa 9658894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 13360381 - 13360413
Alignment:
Q  136 aacatataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||||||    
T  13360381 aacatataattacactgaattatgtgattttct 13360413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 7265603 - 7265634
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  7265603 acatataattacactgaattatgtgattttct 7265634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 9025504 - 9025535
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  9025504 acatataattacactgaattatgtgattttct 9025535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 11591880 - 11591911
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  11591880 acatataattacactgaattatgtgattttct 11591911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 19040401 - 19040370
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  19040401 acatataattacactgaattatgtgattttct 19040370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 26562738 - 26562707
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  26562738 acatataattacactgaattatgtgattttct 26562707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 31579227 - 31579266
Alignment:
Q  129 cgacaccaacatataattacactgaattatgtgattttct 168  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  31579227 cgacaccgacacataattacactgaattatgtgattttct 31579266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 34290075 - 34290114
Alignment:
Q  125 gacacgacaccaacatataattacactgaattatgtgatt 164  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  34290075 gacacgacaccgacacataattacactgaattatgtgatt 34290114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 7027291 - 7027262
Alignment:
Q  137 acatataattacactgaattatgtgatttt 166  Q
    ||||||||||||||||||||||||||||||    
T  7027291 acatataattacactgaattatgtgatttt 7027262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 1532299 - 1532260
Alignment:
Q  126 acacgacaccaacatataattacactgaattatgtgatttt 166  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  1532299 acacgacacca-catataattacactgaattatgtaatttt 1532260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 24833243 - 24833279
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaact 173  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  24833243 acatataattacactaaattatgcgattttcttaact 24833279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 44535 - 44566
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  44535 acatataattacactgaattatgtgattttct 44566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 6471899 - 6471930
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  6471899 acatataattacactgaattatgtgattttct 6471930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 24273040 - 24273071
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  24273040 acatataattacactgaattatgtgattttct 24273071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 24389174 - 24389143
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  24389174 acatataattacactgaattatgtgattttct 24389143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 39758321 - 39758290
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  39758321 acatataattacactgaattatgtgattttct 39758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 41091267 - 41091298
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  41091267 acatataattacactgaattatgtgattttct 41091298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 23016002 - 23016030
Alignment:
Q  140 tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||    
T  23016002 tataattacactgaattatgtgattttct 23016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 28588687 - 28588715
Alignment:
Q  140 tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||    
T  28588687 tataattacactgaattatgtgattttct 28588715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 1864890 - 1864921
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  1864890 acatataattacactgaattatgtgattttct 1864921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 7918221 - 7918252
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  7918221 acatataattacactgaattatgtgattttct 7918252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 10233302 - 10233271
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  10233302 acatataattacactgaattatgtgattttct 10233271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 19324611 - 19324580
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  19324611 acatataattacactgaattatgtgattttct 19324580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 25098565 - 25098596
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  25098565 acatataattacactgaattatgtgattttct 25098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 25361935 - 25361904
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  25361935 acatataattacactgaattatgtgattttct 25361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 30749889 - 30749858
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  30749889 acatataattacactgaattatgtgattttct 30749858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 30771340 - 30771309
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  30771340 acatataattacactgaattatgtgattttct 30771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 34371762 - 34371731
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  34371762 acatataattacactgaattatgtgattttct 34371731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 40181920 - 40181889
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  40181920 acatataattacactgaattatgtgattttct 40181889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 44482279 - 44482248
Alignment:
Q  137 acatataattacactgaattatgtgattttct 168  Q
    ||||||||||||||||||||||||||||||||    
T  44482279 acatataattacactgaattatgtgattttct 44482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 2288169 - 2288211
Alignment:
Q  129 cgacaccaacatataattacactgaattatgtgattttcttaa 171  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||    
T  2288169 cgacaccgacacataattacattgaattatgtgattttcttaa 2288211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 6427413 - 6427368
Alignment:
Q  125 gacacgacaccaaca--tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttct 6427368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 12713337 - 12713371
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    ||||||||||||||| |||||||||||||||||||    
T  12713337 acatataattacactaaattatgtgattttcttaa 12713371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 12717428 - 12717462
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    ||||||||||||||| |||||||||||||||||||    
T  12717428 acatataattacactaaattatgtgattttcttaa 12717462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 13436507 - 13436473
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    ||||||||||||||||||||||||||||| |||||    
T  13436507 acatataattacactgaattatgtgatttccttaa 13436473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 13997932 - 13997898
Alignment:
Q  137 acatataattacactgaattatgtgattttcttaa 171  Q
    |||||||||||||||||||||||||||||| ||||    
T  13997932 acatataattacactgaattatgtgatttttttaa 13997898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 15641028 - 15641074
Alignment:
Q  125 gacacgacaccaacatataattacactgaattatgtgattttcttaa 171  Q
    ||||||||||| | ||||| ||||||||||| |||||||||||||||    
T  15641028 gacacgacaccgatatatagttacactgaatcatgtgattttcttaa 15641074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 17705596 - 17705626
Alignment:
Q  137 acatataattacactgaattatgtgattttc 167  Q
    |||||||||||||||||||||||||||||||    
T  17705596 acatataattacactgaattatgtgattttc 17705626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 1486704 - 1486748
Alignment:
Q  124 cgacacgacaccaaca--tataattacactgaattatgtgatttt 166  Q
    |||||||||||| |||  |||||||||||||||||||||||||||    
T  1486704 cgacacgacaccgacacttataattacactgaattatgtgatttt 1486748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 5944347 - 5944303
Alignment:
Q  124 cgacacgacaccaaca--tataattacactgaattatgtgatttt 166  Q
    |||||||||||| |||  |||||||||||||||||||||||||||    
T  5944347 cgacacgacaccgacacttataattacactgaattatgtgatttt 5944303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 113366 - 113319
Alignment:
Q  121 acacgacacgacaccaaca--tataattacactgaattatgtgatttt 166  Q
    ||||||||||||||| |||  | |||||||||||||||||||||||||    
T  113366 acacgacacgacacctacacttgtaattacactgaattatgtgatttt 113319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 5898277 - 5898305
Alignment:
Q  138 catataattacactgaattatgtgatttt 166  Q
    |||||||||||||||||||||||||||||    
T  5898277 catataattacactgaattatgtgatttt 5898305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 34298482 - 34298454
Alignment:
Q  140 tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||    
T  34298482 tataattacactgaattatgtgattttct 34298454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 36878507 - 36878479
Alignment:
Q  140 tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||    
T  36878507 tataattacactgaattatgtgattttct 36878479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 23484 - 23440
Alignment:
Q  124 cgacacgacaccaaca--tataattacactgaattatgtgatttt 166  Q
    |||||||||||| |||  |||||||||||||||||||||||||||    
T  23484 cgacacgacaccgacacttataattacactgaattatgtgatttt 23440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 53226 - 53198
Alignment:
Q  140 tataattacactgaattatgtgattttct 168  Q
    |||||||||||||||||||||||||||||    
T  53226 tataattacactgaattatgtgattttct 53198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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