View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11962_low_5 (Length: 368)
Name: NF11962_low_5
Description: NF11962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11962_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 165 - 350
Target Start/End: Complemental strand, 10102629 - 10102444
Alignment:
| Q |
165 |
acaactcagtgacctgcaacattcgtttacaaatgacgttggtcaacatgttatgcatgcactataaagtataaatagttattaggcgtcattaaaaaat |
264 |
Q |
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| T |
10102629 |
acaactcagtcacctgcaacattcgtttacaaatgacgttggtcaacatgttatgcatgcactataaagtataaatagttattaggcgtcattaaaaaat |
10102530 |
T |
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| Q |
265 |
accaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtttaacnnnnnnnaaagaacatagtacaattc |
350 |
Q |
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| T |
10102529 |
accaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtttaactttttttaaagaacatagtacaattc |
10102444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10105552 - 10105353
Alignment:
| Q |
1 |
agatgataaaaatgttgaaagataaaagtgggagaatttgatccctatgataaaatactaactgtatcaataactataaaactcctagttactcctttag |
100 |
Q |
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| T |
10105552 |
agatgataaaaaaattgagagataagagttggagaatttgatccctatgataaaatacttactatattaataactacaaaactcctggttactccttcag |
10105453 |
T |
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| Q |
101 |
acaaagattgtgttaatggaattacgaaggatggatccaagataagctgatctgacacctttatacaactcagtgacctgcaacattcgtttacaaatga |
200 |
Q |
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| T |
10105452 |
acaaagattgtgttgatggtattacgaaggaaggatcc-agataagctgatctgacacctgtacacaactcagtcacctgcaacattcatttaaaaatga |
10105354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 10212729 - 10212922
Alignment:
| Q |
4 |
tgataaaaatgttgaaagataaaagtgggagaatttgatccctatgataaaatactaactgtatcaataactataaaactcctagttactcctttagaca |
103 |
Q |
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| T |
10212729 |
tgataaaaaagttgagaggtaagagtgagaaaatttgatccctatcataaaatacttactgtattaataactacaaaactcctagttactcctttaaaca |
10212828 |
T |
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| Q |
104 |
aagattgtgttaatggaattacgaaggatggatccaagataagctgatctgacacctttatacaactcagtgacctgcaacattcgtttacaaatgac |
201 |
Q |
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| T |
10212829 |
aagattgtgttgatggaattacaaaggatggatc----ataagctgatctaacacctttacgcaactcagtcacctgcaacattcgtttaaaaatgac |
10212922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 10213613 - 10213684
Alignment:
| Q |
253 |
tcattaaaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtttaac |
324 |
Q |
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| T |
10213613 |
tcattcaaaaataccaatgaaatataaaacgagatagtactcttcattgcataagaaggtgatcaatttaac |
10213684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 9675292 - 9675394
Alignment:
| Q |
99 |
agacaaagattgtgttaatggaattacgaaggatggatccaagataagctgatctgacacctttatacaactcagtgacctgcaacattcgtttacaaat |
198 |
Q |
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| T |
9675292 |
agacaaacactgtgttgatggaattacaaaggatggatccaggataaactgatctaacaccttcatacgactcagtgatctgcgacattagtttaaaaat |
9675391 |
T |
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| Q |
199 |
gac |
201 |
Q |
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| T |
9675392 |
gac |
9675394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 12105718 - 12105780
Alignment:
| Q |
262 |
aataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtttaac |
324 |
Q |
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| T |
12105718 |
aataccaacgaaagatgaaatgagatagtactcttcattgcacaagaaggtgatcaatttaac |
12105780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 9676022 - 9676075
Alignment:
| Q |
259 |
aaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggt |
312 |
Q |
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| T |
9676022 |
aaaaataccaatgaaacataaaacgagatagtactcttcattgcataagaaggt |
9676075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 9684362 - 9684419
Alignment:
| Q |
259 |
aaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatc |
316 |
Q |
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| T |
9684362 |
aaaaataccattgaaaaatcaaacaagatagtactcttcattgcatgagaaggtgatc |
9684419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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