View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11962_low_6 (Length: 367)
Name: NF11962_low_6
Description: NF11962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11962_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 36935844 - 36936201
Alignment:
| Q |
1 |
taatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatgatg |
100 |
Q |
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| T |
36935844 |
taatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatgatg |
36935943 |
T |
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| Q |
101 |
ttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagacaactcctattcatggtgtttaa------- |
193 |
Q |
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| T |
36935944 |
ttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagactactcctattcatggtgtttaatcttgca |
36936043 |
T |
|
| Q |
194 |
-tcttgctcggttatgaattattttctttggtttttgtatgctcagattgactacaggaagtctcgaaagtgaccattagatggttgtagaagagatcga |
292 |
Q |
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| T |
36936044 |
ttcttgctcggttatgaatta-tttctttggtttttgtatgctcagattgactacaggtagtctcgaaagtgaccattagatggttttagaagagatcga |
36936142 |
T |
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| Q |
293 |
ggctggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacat |
351 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36936143 |
ggttggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacat |
36936201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
296 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
348 |
Q |
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| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
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