View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11962_low_8 (Length: 314)
Name: NF11962_low_8
Description: NF11962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11962_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 33250815 - 33250532
Alignment:
| Q |
14 |
agacgaccaagattcattcccaaaatacccctagcatcatctgattgagtagcgcaaccaaggatgatgggaggggtagtttgggaaggagagaaagcaa |
113 |
Q |
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| T |
33250815 |
agacgaccaagattcattcccaaaatacccctagcatcatctgattgagtagcgcaaccgaggatgatgggaggggtagtttgggaaggagagaaagcaa |
33250716 |
T |
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| Q |
114 |
ttttttctcttacaagattaccctcagcataagttccatcagcatagaaataagaatagtgacataaactattggcatcacaatctgtgggaagactaaa |
213 |
Q |
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| T |
33250715 |
ttttttctcttacaagattaccctcagcataagttccatcagcatagaaataagaatagtgacataaactattggcatcacaatctgtgggaagactaaa |
33250616 |
T |
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| Q |
214 |
atcaggaactcgaggtttacaaagtgggtggttacatgggagaacaaagaaagaagatgaaagagaaggatcaaaggatgaagt |
297 |
Q |
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| T |
33250615 |
atcaggaactcgaggtttacaaagtgggtggttacatgggagaacaaagaaagaagatgaaagagaaggatcaaacgatgaagt |
33250532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 33264914 - 33264624
Alignment:
| Q |
7 |
gaagcagagacgaccaagattcattcccaaaatacccctagcatcatctgattgagtagcgcaaccaaggatgatgggaggggtagtttgggaaggagag |
106 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||| || |||||||||||| |||||||||| |
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| T |
33264914 |
gaaggagaggcgaccaagattcattcccaaaatacccctagcatcatcggattgattagcacaaccgaggataataggaggggtagttagggaaggagat |
33264815 |
T |
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| Q |
107 |
aaagcaattttttctcttacaagattaccctcagcataagttccatcagcatagaaataagaatagtgacataaactattggcatcacaatctgtgggaa |
206 |
Q |
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| T |
33264814 |
aaagcaatattttctctaacaagatttccctcgactacagttccatcagtataggaaaaagaatagtgacataatcgattggcatcacaatccgtgggaa |
33264715 |
T |
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| Q |
207 |
gactaaaatcaggaactcgaggtttacaaagtgggtggttacatgggagaacaaagaaagaagatgaaagagaaggatcaaaggatgaagt |
297 |
Q |
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| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |
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| T |
33264714 |
ggctaatatcaggaacttgaggtttacaaagtgggtggttacatgggagagcaaagaaagaagaggaaagagaaggatcaaacgatgaagt |
33264624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 50237074 - 50237026
Alignment:
| Q |
252 |
ggagaacaaagaaagaagatgaaagagaaggatcaaaggatgaagttgt |
300 |
Q |
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|||| |||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
50237074 |
ggaggacaaagaaagaagatgaaagagaaggatcagacgatgaagttgt |
50237026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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