View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11962_low_9 (Length: 261)
Name: NF11962_low_9
Description: NF11962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11962_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 45706644 - 45706401
Alignment:
| Q |
1 |
atgtgttggtggatggatcgagtttcttgggtacactaccagcctcaagaatggtaaaatatccactgatgatagccattgttttggtaaaaaggaaaat |
100 |
Q |
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| T |
45706644 |
atgtgttggtggatggatcgagtttcttgggtacactaccagcctcaagaatggtaaaatatccactgatgatagccattgttttagtaaaaaggaaaat |
45706545 |
T |
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| Q |
101 |
atcatttaagattcaacattaaaaggaagagaagaatcctaccaatgggggaagtgacatagaaaaggcatggtgtttaacgatcttgatcattaaagaa |
200 |
Q |
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| T |
45706544 |
atcatttaagattcaacattaaaaggaagagaagaatcctaccaatgggggaagtgacatagaaaaggcatggtgtttaacgatcttgatcattaaagaa |
45706445 |
T |
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| Q |
201 |
tttctcatggttaggggttatgaagaacagatgagggtttcttt |
244 |
Q |
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| T |
45706444 |
tttctcatggttaggggttatgaagaactgatgagggtttcttt |
45706401 |
T |
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