View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11963_low_2 (Length: 314)
Name: NF11963_low_2
Description: NF11963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11963_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 4528863 - 4528589
Alignment:
| Q |
16 |
atgaacataaacatgtgtagcaataatggtaatagtagtgcttgtggatgtggtagtggaggaggaggcaatgatcatggtgttaccatgtggagttctg |
115 |
Q |
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| T |
4528863 |
atgaacataaacatgtgtagcaataatggtagtagtagtgcttgtggatgtggtagtggaggaggaggcaatgatcatggtgttaccatgtggagttctg |
4528764 |
T |
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| Q |
116 |
gtctgaagaaacaacaacagcagcaacaaaaacgtccgaggattccgaaaagaggtcccggtgttgcagaacttgagaagatcttgagagaacaagaatc |
215 |
Q |
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| T |
4528763 |
gtctgaagaaacaacaacagcagcaacaaaaacgtccgaggattccgaaaagaggtcccggtgttgcagaacttgagaagatcttgagagaacaagaatc |
4528664 |
T |
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| Q |
216 |
tactgacataacaacaaaagatagaggaaataatgaaggattttcagtttcgtcttcgtgtttgatgcctcatta |
290 |
Q |
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| T |
4528663 |
tactgacataacaacaaaagatagaggaaataatgaaggattttcagtttcgtcttcgtgtttgatgcctcatta |
4528589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 16995077 - 16994957
Alignment:
| Q |
92 |
atggtgttaccatgtggagttctggtctgaagaaacaacaacagcagcaacaaaaacgtccgaggattccgaaaagaggtcccggtgttgcagaacttga |
191 |
Q |
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|||||| ||||||||| ||||||||| |||| |||||||| ||| | |||||||||||||| ||| |||||||||||||||||||| |||| |||||||| |
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| T |
16995077 |
atggtgataccatgtgcagttctggtttgaaaaaacaacatcaggaacaacaaaaacgtcctagggttccgaaaagaggtcccggtattgctgaacttga |
16994978 |
T |
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| Q |
192 |
gaagatcttgagagaacaaga |
212 |
Q |
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| T |
16994977 |
gaagctcttgagagaaaaaga |
16994957 |
T |
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