View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11964_high_7 (Length: 261)

Name: NF11964_high_7
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11964_high_7
NF11964_high_7
[»] chr2 (6 HSPs)
chr2 (1-243)||(42477083-42477325)
chr2 (12-198)||(34523902-34524091)
chr2 (11-123)||(22468283-22468395)
chr2 (11-123)||(22474504-22474616)
chr2 (115-199)||(22466896-22466980)
chr2 (13-121)||(35651491-35651599)
[»] chr6 (3 HSPs)
chr6 (11-175)||(22257622-22257786)
chr6 (11-185)||(24696035-24696209)
chr6 (11-108)||(24697536-24697633)
[»] chr1 (1 HSPs)
chr1 (11-198)||(21976223-21976413)
[»] scaffold0168 (1 HSPs)
scaffold0168 (11-198)||(13364-13554)
[»] chr8 (2 HSPs)
chr8 (11-175)||(30793813-30793977)
chr8 (66-199)||(34228352-34228485)
[»] chr5 (1 HSPs)
chr5 (11-198)||(26543081-26543271)
[»] scaffold0769 (1 HSPs)
scaffold0769 (12-198)||(1939-2128)
[»] scaffold0012 (1 HSPs)
scaffold0012 (11-199)||(194664-194845)
[»] chr7 (4 HSPs)
chr7 (11-141)||(26503351-26503481)
chr7 (11-141)||(26589233-26589363)
chr7 (11-147)||(38577755-38577885)
chr7 (83-143)||(34224476-34224536)
[»] chr3 (2 HSPs)
chr3 (11-150)||(31986656-31986789)
chr3 (11-103)||(53708012-53708104)
[»] chr4 (1 HSPs)
chr4 (85-121)||(12211398-12211434)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42477325 - 42477083
Alignment:
Q  1 ttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  42477325 ttctaagatttggatcacgcacaatctcatttggattaaacttgttggtcacattaggcggtggttcttctacttcgcctttcggttgcacaacattcac 42477226  T
Q  101 attctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgacataacaagtttaaaaaataacg 200  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  42477225 attctcattatttattctatctatcaaaaacctcctcatctctgaaatttaatgattcaagattaatattcaattcacataacaagtttaaaaaataacg 42477126  T
Q  201 acattcaagcagcctttgaagcaagcaaacaagaccaaaaaag 243  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  42477125 acatacaaccagcctttgaagcaagcaaacaagaccaaaaaag 42477083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 34524091 - 34523902
Alignment:
Q  12 ggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaatat 111  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||  || ||||||||||||||| |||||||| ||      
T  34524091 ggatcacgcacaatctcatttggattaaactcattgaccacattaggcggtggttcttcttcttcggtttccggttgcacaacatttacattctcgatcc 34523992  T
Q  112 ttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaagtttaaaaaataa 198  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||||||||||||||    
T  34523991 ttgttctatctaccaaaaacttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataataacaagtttaaaaaataa 34523902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 22468395 - 22468283
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||  || ||||||||||||||| |||||||||||     
T  22468395 tggatcgcgcacaatctcatttggattaaactcattggccacattaggcggtggtttttctacttcggcttccggttgcacaacatttacattctcaatc 22468296  T
Q  111 tttgttctatcta 123  Q
     ||||||||||||    
T  22468295 cttgttctatcta 22468283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 22474616 - 22474504
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||  || ||||||||||||||| |||||||||||     
T  22474616 tggatcgcgcacaatctcatttggattaaactcattggccacattaggcggtggtttttctacttcggcttccggttgcacaacatttacattctcaatc 22474517  T
Q  111 tttgttctatcta 123  Q
     ||||||||||||    
T  22474516 cttgttctatcta 22474504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 22466980 - 22466896
Alignment:
Q  115 ttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgacataacaagtttaaaaaataac 199  Q
    ||||||||| ||||||| |||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||    
T  22466980 ttctatctaccaaaaacttcctcatctctgaaatttaatgattcaaagtgaatattcaatttacataacaagtttaaaaaataac 22466896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 35651491 - 35651599
Alignment:
Q  13 gatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaatatt 112  Q
    |||||||||||||||||||||||||||| |  |||||  |||||| |||||||||||||||||||  || || |||||||||||||||||||| |||| |    
T  35651491 gatcacgcacaatctcatttggattaaattcattggctccattaggcggtggttcttctacttcggcttccgattgcacaacattcacattctgaatact 35651590  T
Q  113 tgttctatc 121  Q
    |||||||||    
T  35651591 tgttctatc 35651599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 22257622 - 22257786
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||  || |||||||||||||||| |||||||||||    
T  22257622 tggatcatgcacaatctcatttggattaaactcattggccacattaggcggtggttcttctacttcggcttccggttgcacaacattcgcattctcaata 22257721  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaatt 175  Q
     |||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  22257722 cttgttctatcaaccaaaaacctcctcatctctgaaatttaatggtccaaagttaatattcaatt 22257786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 24696209 - 24696035
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||   || ||||||||||||||||||||||||||||    
T  24696209 tggatcacgcacaatctcatttgaattaaacttattagccacaatagacggtggttcttctacttcaacttccggttgcacaacattcacattctcaata 24696110  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgacataacaa 185  Q
     ||||||||| || ||||||||||||||||||||| ||||||| || ||| |||||||||||||| |||||||||    
T  24696109 cttgttctatttaccaaaaacctcctcatctctgagatttaatcattcaaagttaatattcaattcacataacaa 24696035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 24697536 - 24697633
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaa 108  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||    
T  24697536 tggatcacgcacaatctcatttgaattaaactcattggccacattagacggtgattcttctacttcggcttccggttgcacaacattcacattctcaa 24697633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 21976223 - 21976413
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||  || ||||||||||||||| |||||||||||     
T  21976223 tggatcacgcacaatctcatttggattaaactcattggccacattaggcggtggttcttctacttcggtttccggttgcacaacatttacattctcaatc 21976322  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaagtttaaaaaataa 198  Q
     |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||||||||||||||    
T  21976323 cttgttctatctaccaaaaacttcctcatctctgaaatttaaagattcaaagtgaatattcaatttacataataacaagtttaaaaaataa 21976413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 13554 - 13364
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||  || ||||||||||||||| |||||||| ||     
T  13554 tggatcacgcacaatctcatttggattaaactcattgaccacattaggcggtggttcttctacttcggtttccggttgcacaacatttacattctcgatc 13455  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaagtttaaaaaataa 198  Q
     |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||||||||||||||    
T  13454 cttgttctatctaccaaaaacttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataataacaagtttaaaaaataa 13364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 30793813 - 30793977
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||||| |||||||||||||| |||||  ||||||| ||||| || ||||||||||||||||  || ||||||||||||||||||||||||||||    
T  30793813 tggatcacgcaaaatctcatttggatgaaactcattggccaaattaggcgatggttcttctacttcggcttccggttgcacaacattcacattctcaata 30793912  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaatt 175  Q
    ||||||||||  ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  30793913 tttgttctattaatcaaaaacctcctcatgtctgaaatttaatggtccaaagttaatattcaatt 30793977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 34228352 - 34228485
Alignment:
Q  66 tcttctacttcgcatttcggttgcacaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggtta 165  Q
    ||||||||||||  || | |||| ||||||||| |||| ||||||||| ||||||| | ||||||| || |||||||| |||||||||||||||| ||||    
T  34228352 tcttctacttcggcttccagttgtacaacattcgcattttcaatatttattctatcaaccaaaaacatcttcatctctaaaatttaatgatccaaagtta 34228451  T
Q  166 atattcaattgacataacaagtttaaaaaataac 199  Q
    ||||||||   ||||| |||||| ||||||||||    
T  34228452 atattcaagacacatagcaagttcaaaaaataac 34228485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 26543081 - 26543271
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||  || ||||||||||||||| |||||||| ||     
T  26543081 tggatcacgcacaatctcatttggattaaactcattgaccacattaggcggtggttcttctacttcggtttccggttgcacaacatttacattctcgatc 26543180  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaagtttaaaaaataa 198  Q
     |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||||||||||||||    
T  26543181 cttgttctatctaccaaaaacttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataataacaagtttaaaaaataa 26543271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 2128 - 1939
Alignment:
Q  12 ggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaatat 111  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||  || ||||||||||||||| |||||||| ||      
T  2128 ggatcacgcacaatctcatttggattaaactcattgaccacattaggcggtggttcttctgcttcggtttccggttgcacaacatttacattctcgatcc 2029  T
Q  112 ttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaagtttaaaaaataa 198  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||||||||||||||    
T  2028 ttgttctatctaccaaaaacttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataataacaagtttaaaaaataa 1939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 194845 - 194664
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    |||||||||||||||||||||||| | |      ||||||||||||| |||||||||||||||||||  || ||||||||||||||| |||||||||||     
T  194845 tggatcacgcacaatctcatttggctca------ttggccacattaggcggtggttcttctacttcgg-ttccggttgcacaacatttacattctcaatc 194753  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgacataacaagtttaaaaaataac 199  Q
     |||||||||||| ||||||  |||||||||||||||||||| ||| ||| || ||||||||||| |||||||||||||||||||||||    
T  194752 cttgttctatctaccaaaaatttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataacaagtttaaaaaataac 194664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 26503481 - 26503351
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||||| || || |||||||||||||  || |||||| |||||||||||||||||||||    
T  26503481 tggatcacgcacaatctcattcggattaaactcattggctacattaggcgatgtttcttctacttcgggttccggttggacaacattcacattctcaata 26503382  T
Q  111 tttgttctatctatcaaaaacctcctcatct 141  Q
     |||||||||||| ||||||||| |||||||    
T  26503381 attgttctatctaccaaaaaccttctcatct 26503351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 26589233 - 26589363
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||||| || || |||||||||||||  || |||||| |||||||||||||||||||||    
T  26589233 tggatcacgcacaatctcattcggattaaactcattggctacattaggcgatgtttcttctacttcgggttccggttggacaacattcacattctcaata 26589332  T
Q  111 tttgttctatctatcaaaaacctcctcatct 141  Q
     |||||||||||| ||||||||| |||||||    
T  26589333 attgttctatctaccaaaaaccttctcatct 26589363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 38577755 - 38577885
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||| | ||||||| ||||||||||||  |||||||||||||  |||||||||||||||| |  || ||||||||||||||||||||      ||    
T  38577755 tggatcacgtataatctcaattggattaaactcattggccacattaggtggtggttcttctactttggcttccggttgcacaacattcacat------ta 38577848  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaa 147  Q
     |||||||||  | |||||| ||||||||||||||||    
T  38577849 cttgttctattaaccaaaaatctcctcatctctgaaa 38577885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 34224476 - 34224536
Alignment:
Q  83 cggttgcacaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctct 143  Q
    ||||| ||||||||||| |||||||||| ||||| |||| | ||||||| |||||||||||    
T  34224476 cggtttcacaacattcatattctcaatacttgttttatcaaccaaaaacttcctcatctct 34224536  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 31986789 - 31986656
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaata 110  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||  ||||||||||||| ||||  || ||||||||||||||||||||      ||    
T  31986789 tggatcacgtacaatctcatttggattaaactcattggccacattaggtggtggttcttctatttcggcttccggttgcacaacattcacat------ta 31986696  T
Q  111 tttgttctatctatcaaaaacctcctcatctctgaaattt 150  Q
     |||||||||| | |||||| |||||||||||||||||||    
T  31986695 cttgttctatcaaccaaaaatctcctcatctctgaaattt 31986656  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 53708104 - 53708012
Alignment:
Q  11 tggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacatt 103  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||  || |||||||||||||||||||||    
T  53708104 tggatcacgtacaatctcatttggattaaactcattggccacattaggtggtggttcttctacttcggcttccggttgcacaacattcacatt 53708012  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 12211398 - 12211434
Alignment:
Q  85 gttgcacaacattcacattctcaatatttgttctatc 121  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  12211398 gttgcacaacattcatattctcaatacttgttctatc 12211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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