View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11964_low_1 (Length: 559)
Name: NF11964_low_1
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11964_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 5 - 542
Target Start/End: Complemental strand, 8139381 - 8138852
Alignment:
| Q |
5 |
ttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaacacagattcatcat |
104 |
Q |
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| T |
8139381 |
ttccaaaaacagtgatattcaagcatgcattcagtaacaaagactaaa---------aaaaaaaatcaacagatgcgcttcaaaaacacagattcatcat |
8139291 |
T |
|
| Q |
105 |
tcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaa |
204 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139290 |
tcatagaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaa |
8139191 |
T |
|
| Q |
205 |
gaaacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacatcattccaaagtcagccatgtattaactgata |
304 |
Q |
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| T |
8139190 |
gaaacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacataattccaaagtcagccatgtattaactgata |
8139091 |
T |
|
| Q |
305 |
gtgcatacat-aaacaattagatgagagccacagaaactttagaactgttacggaagaataatttttcccattannnnnnnncttagcattcgaaataga |
403 |
Q |
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| T |
8139090 |
gtgcatacataaaacaattagatgagagccacagaaactttagaactgttacggaagaataatttttcccattattttttttcttagcattcgaaataga |
8138991 |
T |
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| Q |
404 |
gatcaaatagttttaattttgatttattataatagattttgattttgatacatttacttaaaacggattgtacgaaaaataaatttgatcataacaattt |
503 |
Q |
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| T |
8138990 |
gatcaaatagttttaattttgatttattataatagattttgattttgatacatttacttaaaacggattgtacgaaaaataaatttgatcataacaattt |
8138891 |
T |
|
| Q |
504 |
gactttcaaatcaagttgcaagttggcatatgaagacat |
542 |
Q |
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| T |
8138890 |
gactttcaaatcaagttgcaagttggcatatgaagacat |
8138852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 427 - 538
Target Start/End: Original strand, 7670694 - 7670808
Alignment:
| Q |
427 |
ttattataatagattttgattttgatacatttactt-aaaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgca |
523 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
7670694 |
ttattataatagattttgattttgatacatttacttaaaaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgca |
7670793 |
T |
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| Q |
524 |
agttggcatatgaag |
538 |
Q |
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| T |
7670794 |
agttggcatatgaag |
7670808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 427 - 538
Target Start/End: Original strand, 7708916 - 7709030
Alignment:
| Q |
427 |
ttattataatagattttgattttgatacatttactt-aaaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgca |
523 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
7708916 |
ttattataatagattttgattttgatacatttacttaaaaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgca |
7709015 |
T |
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| Q |
524 |
agttggcatatgaag |
538 |
Q |
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| T |
7709016 |
agttggcatatgaag |
7709030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 7499543 - 7499701
Alignment:
| Q |
5 |
ttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaacacagattcatcat |
104 |
Q |
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| T |
7499543 |
ttccaaaaacagtgatgttcaagcatgcattcagtaacaaagactcaa--------aaaaaaaaatcaacagatgagcttcaaaa-cacagattcatcat |
7499633 |
T |
|
| Q |
105 |
tcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttac |
172 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |
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| T |
7499634 |
tcatagaagtgatcatgattgcagaaataaatgataaagatttttagataaatgattaagatttttac |
7499701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 7502967 - 7503107
Alignment:
| Q |
90 |
acacagattcatcattcatggaaatgatcat--gattgcagaaataaatgatcaagatttttaaataaatgagaa---agatttttacataaatgattaa |
184 |
Q |
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| T |
7502967 |
acacagattcatcattcatagaagtgatcatatgattgcagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcag |
7503066 |
T |
|
| Q |
185 |
gatttatacttaatgatcaagaaacataaaaaactgagaca |
225 |
Q |
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| T |
7503067 |
gatttttacttaatgatcaagaaacataaaaaactgggaca |
7503107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 7499722 - 7499845
Alignment:
| Q |
261 |
aaaactgagacatcattccaaagtcagccatgtattaactgatagtgcatacataaacaattaga-------tgagagccacagaaactttagaactgtt |
353 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
7499722 |
aaaactgagacatcattctaaaaccagccatgtattaacagatagtgcatatataaacaattagatcagacttcagagccacagaaactttagaactgtt |
7499821 |
T |
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| Q |
354 |
acggaagaataatttttcccatta |
377 |
Q |
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| T |
7499822 |
attgaagaataatttttcccatta |
7499845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 7499658 - 7499735
Alignment:
| Q |
150 |
aaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatc |
227 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
7499658 |
aaataaatgataaagatttttagataaatgattaagatttttacttcatgatctagaaacataaaaaactgagacatc |
7499735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 464 - 538
Target Start/End: Complemental strand, 7709614 - 7709538
Alignment:
| Q |
464 |
aaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgcaagttggcatatgaag |
538 |
Q |
| |
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||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
7709614 |
aaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgcaagttggcatatgaag |
7709538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 7502886 - 7502928
Alignment:
| Q |
5 |
ttccaaaaacagtgatattcaagcatgcattcagtaacaaaga |
47 |
Q |
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| T |
7502886 |
ttccaaaaacagtgatatccaagcatgcaatcagtaacaaaga |
7502928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 7503119 - 7503160
Alignment:
| Q |
91 |
cacagattcatcattcatggaaatgatcatgattgcagaaat |
132 |
Q |
| |
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| T |
7503119 |
cacaaattcatcattcatagaagtgatcatgattgcagaaat |
7503160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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