View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11964_low_10 (Length: 207)

Name: NF11964_low_10
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11964_low_10
NF11964_low_10
[»] chr2 (5 HSPs)
chr2 (26-195)||(42477339-42477508)
chr2 (1-136)||(22468381-22468514)
chr2 (1-136)||(22474602-22474735)
chr2 (1-136)||(34524078-34524211)
chr2 (20-138)||(35651368-35651484)
[»] chr8 (7 HSPs)
chr8 (5-138)||(30793692-30793823)
chr8 (135-195)||(30791457-30791517)
chr8 (135-194)||(21958628-21958687)
chr8 (135-168)||(10467867-10467900)
chr8 (132-168)||(10014461-10014497)
chr8 (135-195)||(13152393-13152453)
chr8 (135-195)||(16532631-16532690)
[»] chr7 (7 HSPs)
chr7 (1-136)||(26503467-26503602)
chr7 (1-136)||(26589112-26589247)
chr7 (7-136)||(38577636-38577763)
chr7 (135-195)||(26493713-26493773)
chr7 (135-194)||(19400094-19400153)
chr7 (135-194)||(27387306-27387365)
chr7 (144-194)||(38575289-38575339)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-136)||(13540-13673)
[»] chr5 (3 HSPs)
chr5 (1-136)||(26542962-26543095)
chr5 (135-195)||(22542002-22542062)
chr5 (138-195)||(2229034-2229091)
[»] scaffold0769 (1 HSPs)
scaffold0769 (1-136)||(2115-2248)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-136)||(194831-194964)
[»] chr3 (6 HSPs)
chr3 (1-136)||(31986775-31986908)
chr3 (1-136)||(53708090-53708223)
chr3 (135-194)||(24908393-24908452)
chr3 (135-194)||(53710514-53710573)
chr3 (136-194)||(51408609-51408667)
chr3 (135-194)||(31989145-31989204)
[»] chr1 (2 HSPs)
chr1 (1-136)||(21976104-21976237)
chr1 (135-195)||(52753819-52753879)
[»] chr6 (5 HSPs)
chr6 (1-136)||(24697417-24697550)
chr6 (1-101)||(22257538-22257636)
chr6 (1-129)||(24696195-24696321)
chr6 (136-195)||(11971076-11971135)
chr6 (135-168)||(32442000-32442033)
[»] scaffold0019 (1 HSPs)
scaffold0019 (135-195)||(134853-134913)
[»] scaffold0015 (1 HSPs)
scaffold0015 (135-194)||(214161-214220)
[»] chr4 (1 HSPs)
chr4 (137-195)||(25182878-25182936)
[»] scaffold0007 (1 HSPs)
scaffold0007 (135-195)||(260034-260094)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 42477339 - 42477508
Alignment:
Q  26 aacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgcaatcaaatttgccatgttttcctcgt 125  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  42477339 aacaaattcatgtgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaagggtccaatgcaaccaaatttgccatgttttcctcgt 42477438  T
Q  126 actcaatttggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42477439 actcaattcggaaagggtacttacctcttaattttatttagcatgttatcgacaggttacatttcatctc 42477508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 22468381 - 22468514
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||| ||||||  |||||| |||||||||     ||||||||| ||||||||||||||||||| |||||||  ||||||||||| ||||||  |||    
T  22468381 attgtgcgcgatccaggtcttaggaaacaaatttgggagtatgctccagatattcaagaccaagtgaggagggca--tatatattgaagggtccaacgca 22468478  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||||| || ||||||||||||||||||||||    
T  22468479 accaaatttggcaagttttcctcgtactcaatttgg 22468514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 22474602 - 22474735
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||| ||||||  |||||| |||||||||     ||||||||| ||||||||||||||||||| |||||||  ||||||||||| ||||||  |||    
T  22474602 attgtgcgcgatccaggtcttaggaaacaaatttgggagtatgctccagatattcaagaccaagtgaggagggca--tatatattgaagggtccaacgca 22474699  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||||| || ||||||||||||||||||||||    
T  22474700 accaaatttggcaagttttcctcgtactcaatttgg 22474735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 34524078 - 34524211
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    ||||||||||||||   |||||| |||||||||     ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||   ||    
T  34524078 attgtgcgtgatccgggtcttaggaaacaaatttgggagtatgctccggatattcaagaccaagtgaggaggg--catatatattgaagggtccaacaca 34524175  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||| | || ||||||||||||||||||||||    
T  34524176 accaaattaggcaagttttcctcgtactcaatttgg 34524211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 35651484 - 35651368
Alignment:
Q  20 ttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgcaatcaaatttgccatgtttt 119  Q
    |||| ||||||||||||  ||||||| || |||||||||||||||||| |||||  |||||||||||||  ||||| |||||  |||||||||| |||||    
T  35651484 ttaggaaacaaattcatgcgtatgctacgaatattcaagaccaagtgaggaggg--catatatattgaagagtccaatgcaacaaaatttgccaagtttt 35651387  T
Q  120 cctcgtactcaatttggaa 138  Q
    |||| | ||||||||||||    
T  35651386 cctcatgctcaatttggaa 35651368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 30793823 - 30793692
Alignment:
Q  5 tgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgcaatca 104  Q
    |||||||||||  |||||| |||||||||||| ||||||||||||||||||||||| | |||| |||||  ||||||||||||| |||||| ||||| ||    
T  30793823 tgcgtgatccaggtcttaggaaacaaattcatttgtatgctccggatattcaagacgatgtgaggaggg--catatatattgaagggtccaatgcaacca 30793726  T
Q  105 aatttgccatgttttcctcgtactcaatttggaa 138  Q
    |||||  || ||||||||||||||||||||||||    
T  30793725 aatttttcaagttttcctcgtactcaatttggaa 30793692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 30791517 - 30791457
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||| ||||||| | ||||||||||||||| ||||| ||||||||| ||||||||||    
T  30791517 ggaaagggcatttaccacctaattttatttagcacgctattgacaggttatatttcatctc 30791457  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 21958628 - 21958687
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    |||||||| ||||||||| ||||||||||||||| ||||| | ||||||| |||||||||    
T  21958628 ggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 21958687  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 10467867 - 10467900
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagca 168  Q
    |||||||||||||||||| |||||||||||||||    
T  10467867 ggaaagggtatttacctcataattttatttagca 10467900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 10014497 - 10014461
Alignment:
Q  132 tttggaaagggtatttacctcttaattttatttagca 168  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  10014497 tttggaaagggcatttacctcctaattttatttagca 10014461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 13152453 - 13152393
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||| ||||||||| |||||||||||||||  |||| |||| ||||  |||||||||    
T  13152453 ggaaagggcatttacctcctaattttatttagcacactattgacaagttatgtttcatctc 13152393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 16532690 - 16532631
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||| ||||||||| ||||||||||||||| ||||| | | ||||| ||||||||||    
T  16532690 ggaaagggcatttacctcctaattttatttagcacgctattg-ctggttatatttcatctc 16532631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26503467 - 26503602
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| ||||||| |||||| ||||    
T  26503467 attgtgcgtgatccaggtcttaggaaacaaattcatttgtatgctccggatattcaagacgatgtgaggagggcatatatgtattgaagggtccaatgca 26503566  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||| ||   | ||||||||||||||| ||||||    
T  26503567 accaaaattaaaaagttttcctcgtactccatttgg 26503602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 26589247 - 26589112
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| ||||||| |||||| ||||    
T  26589247 attgtgcgtgatccaggtcttaggaaacaaattcatttgtatgctccggatattcaagacgatgtgaggagggcatatatgtattgaagggtccaatgca 26589148  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||| ||   | ||||||||||||||| ||||||    
T  26589147 accaaaattaaaaagttttcctcgtactccatttgg 26589112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 38577763 - 38577636
Alignment:
Q  7 cgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgcaatcaaa 106  Q
    |||||||||  || ||| |||||||||||||  ||||||||| |||||||||||||||||| |||||  ||||||| ||||| |||||| ||||| ||||    
T  38577763 cgtgatccaggtcgtaggaaacaaattcatacatatgctccgaatattcaagaccaagtgaggaggg--catatatcttgaagggtccaatgcaaccaaa 38577666  T
Q  107 tttgccatgttttcctcgtactcaatttgg 136  Q
    |||| || |||||| |||||||| ||||||    
T  38577665 tttgtcaagttttcttcgtactctatttgg 38577636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 26493773 - 26493713
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||| ||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||    
T  26493773 ggaaagggcatttacctcctaattttatttagcacgctattgacaggttatatttcatctc 26493713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 19400094 - 19400153
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    |||||||||||||||||| ||||||||||||||| ||||| | ||||||| |||||||||    
T  19400094 ggaaagggtatttacctcctaattttatttagcacgctattggcaggttatatttcatct 19400153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 27387365 - 27387306
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    |||||| | ||||||||| ||||||||||||||| ||||| ||||||||| |||||||||    
T  27387365 ggaaagagcatttacctcctaattttatttagcacgctattgacaggttatatttcatct 27387306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 38575339 - 38575289
Alignment:
Q  144 atttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    ||||||||| ||||||||||||||| ||||| ||||||||| |||||||||    
T  38575339 atttacctcctaattttatttagcacgctattgacaggttatatttcatct 38575289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 13540 - 13673
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||||||||||  |||||| |||||||||     ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||   ||    
T  13540 attgtgcgtgatccaggtcttaggaaacaaatttgggagtatgctccggatattcaagaccaagtgaggaggg--catatatattgaagggtccaacaca 13637  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||||| || ||||||||||||||||||||||    
T  13638 accaaatttggcaagttttcctcgtactcaatttgg 13673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 26543095 - 26542962
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||||||||||  |||||| |||||||||     ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||   ||    
T  26543095 attgtgcgtgatccaggtcttaggaaacaaatttgggagtatgctccggatattcaagaccaagtgaggaggg--catatatattgaagggtccaacaca 26542998  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||||| || ||||||||||||||||||||||    
T  26542997 accaaatttggcaagttttcctcgtactcaatttgg 26542962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 22542002 - 22542062
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||| ||||||||| ||||||||||||||| ||||| | ||||||| ||||| ||||    
T  22542002 ggaaagggcatttacctcataattttatttagcacgctattgtcaggttatatttcttctc 22542062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 2229034 - 2229091
Alignment:
Q  138 aagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    ||||| ||||||||| ||||||||||||||| ||||| |  |||||| ||||||||||    
T  2229034 aagggcatttacctcctaattttatttagcacgctattggtaggttatatttcatctc 2229091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 2115 - 2248
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    ||||||||||||||   |||||| |||||||||     ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||   ||    
T  2115 attgtgcgtgatccgggtcttaggaaacaaatttgggagtatgctccggatattcaagaccaagtgaggaggg--catatatattgaagggtccaacaca 2212  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||||| || ||||||||||||||||||||||    
T  2213 accaaatttggcaagttttcctcgtactcaatttgg 2248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 194831 - 194964
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||||||||||  |||||| |||||||||     ||||||||||||||||||||||||||||| || ||||  ||||||||||| |||| |  |||    
T  194831 attgtgcgtgatccaggtcttaggaaacaaatttgggagtatgctccggatattcaagaccaagtgaggaaggca--tatatattgaagggtctaacgca 194928  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||||| || ||||||||||||||||||||||    
T  194929 accaaatttggcaagttttcctcgtactcaatttgg 194964  T

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Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 31986775 - 31986908
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    ||||| |||||||||  || ||| |||||||||||||  |||||||||||||||||||||||||||| |||||  ||||||| ||||| |||||  ||||    
T  31986775 attgtacgtgatccaggtcgtaggaaacaaattcatacatatgctccggatattcaagaccaagtgaggaggg--catatatcttgaagggtccgatgca 31986872  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||||| || ||||||| ||||||| ||||||    
T  31986873 accaaatttgtcaagttttccacgtactctatttgg 31986908  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 53708090 - 53708223
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    ||||| |||||||||  || ||| |||||||||||||  |||||| ||||||||||||||||||||| |||||  |||| || ||||| |||||| ||||    
T  53708090 attgtacgtgatccaggtcgtaggaaacaaattcatacatatgctacggatattcaagaccaagtgaggaggg--cataaatcttgaagggtccaatgca 53708187  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||||||| || ||||||| ||||||| ||||||    
T  53708188 accaaatttgtcaagttttccacgtactctatttgg 53708223  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 24908452 - 24908393
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    |||||||||||||||||| ||||||||||||||| |||||  |||||||| |||||||||    
T  24908452 ggaaagggtatttacctcctaattttatttagcacgctattcacaggttatatttcatct 24908393  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 53710514 - 53710573
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    |||||||| ||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||    
T  53710514 ggaaagggcatttacctcctaattttatttagcacgctattgacaggttatattttatct 53710573  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 51408667 - 51408609
Alignment:
Q  136 gaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||| |||| |||||||||    
T  51408667 gaaagggcatttacctcctaattttatttagcacgctattgacatgttatatttcatct 51408609  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 31989145 - 31989204
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    |||||||| ||||||||| ||||||||||||||| || ||  |||||||| |||||||||    
T  31989145 ggaaagggcatttacctcctaattttatttagcacgccattaacaggttatatttcatct 31989204  T

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Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 21976237 - 21976104
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||||||||||  |||||| |||||||||     ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||   ||    
T  21976237 attgtgcgtgatccaggtcttaggaaacaaatttgggagtatgctccggatattcaagaccaagtgaggaggg--catatatattgaagggtccaacaca 21976140  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | ||||||||  | ||||||||||||||||||||||    
T  21976139 accaaatttggtaagttttcctcgtactcaatttgg 21976104  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 52753879 - 52753819
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||||||||||||| ||||||||| |||||  |||| |||| ||||  |||||||||    
T  52753879 ggaaagggtatttacctcctaattttatctagcacactattgacaagttatgtttcatctc 52753819  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24697550 - 24697417
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||||||||||  |||||| |||||||||||| |||||||||||||||||| |||| |||||| || ||  ||||| ||||||| |||| | ||||    
T  24697550 attgtgcgtgatccaggtcttaggaaacaaattcatctgtatgctccggatattcgagacgaagtgaggacgg--catatgtattgaagggtctaatgca 24697453  T
Q  101 atcaaatttgccatgttttcctcgtactcaatttgg 136  Q
    | |||| ||  || ||||||||||||||| ||||||    
T  24697452 accaaaattaacaagttttcctcgtactccatttgg 24697417  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 22257636 - 22257538
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    ||||||| |||||||  |||||| |||||||||||| ||||||||||||||||||||||| | |||| |||||  ||||||||||||| |||||| ||||    
T  22257636 attgtgcatgatccaggtcttaggaaacaaattcatttgtatgctccggatattcaagacgatgtgaggaggg--catatatattgaagggtccaatgca 22257539  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 24696195 - 24696321
Alignment:
Q  1 attgtgcgtgatccaaatcttagaaaacaaattcatatgtatgctccggatattcaagaccaagtgatgagggcacatatatattgaaaggtccattgca 100  Q
    |||||||||||||||  |||||| |||||||||||| |||||||||||||||||| |||| |||||| || |  |||||| ||||||| |||||| | ||    
T  24696195 attgtgcgtgatccaggtcttaggaaacaaattcatttgtatgctccggatattcgagacgaagtgaggacg--acatatgtattgaagggtccaataca 24696292  T
Q  101 atcaaatttgccatgttttcctcgtactc 129  Q
    | |||| ||  || | |||||||||||||    
T  24696293 accaaaattaacaagatttcctcgtactc 24696321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 11971076 - 11971135
Alignment:
Q  136 gaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    ||||||| ||||||||| |||||||||||||||  |||| |||||||||  |||||||||    
T  11971076 gaaagggcatttacctcctaattttatttagcacactattgacaggttatgtttcatctc 11971135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 32442033 - 32442000
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagca 168  Q
    |||||||| |||||||||||||||||||||||||    
T  32442033 ggaaagggcatttacctcttaattttatttagca 32442000  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 134913 - 134853
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||| ||||||||| ||||||||||||||| ||||| || |||||| ||||||||||    
T  134913 ggaaagggcatttacctcctaattttatttagcacgctattgataggttatatttcatctc 134853  T

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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 214220 - 214161
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatct 194  Q
    |||||||| ||||||||| ||||||||||||||| ||||| | ||||||| |||||||||    
T  214220 ggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 214161  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 25182936 - 25182878
Alignment:
Q  137 aaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    |||||||||||||||  |||||||||||||||  |||| || |||||| ||||||||||    
T  25182936 aaagggtatttaccttctaattttatttagcacactattgataggttatatttcatctc 25182878  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 260034 - 260094
Alignment:
Q  135 ggaaagggtatttacctcttaattttatttagcatgctatcgacaggttacatttcatctc 195  Q
    ||||| || ||||||| | ||||||||||||||| ||||| ||||| ||| ||||||||||    
T  260034 ggaaatggcatttaccacctaattttatttagcacgctattgacagattatatttcatctc 260094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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