View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11964_low_2 (Length: 506)
Name: NF11964_low_2
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11964_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 36931922 - 36931426
Alignment:
| Q |
1 |
aatggtggagccgctgcaggaggaggatggagcctgtagcccacaagagctgcaccaaatgggttgttctgctctaaattgcgaagtgcttctgcagcat |
100 |
Q |
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| T |
36931922 |
aatggtggagccgctgcaggaggaggatggagcctgtagcccacaagagctgcaccaaatgggttgttctgctctaaattgcgaagtgcttctgcagcat |
36931823 |
T |
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| Q |
101 |
ctatgcttctaacaaaaacaatttgagcactaccattatctttcatcatctgagtttcggatgctttcagcggaccaaaccggcaaaatgttttcaacaa |
200 |
Q |
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| T |
36931822 |
ctatgcttctaacaaaaacaatttgagcactaccattatctttcatcatctgagtttcggatgctttcagcggaccaaaccggcaaaatgttttcaacaa |
36931723 |
T |
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| Q |
201 |
atcctcttttgatgggatatcaactcctggtgcgaattgtagaaagagaaaggttccaactgattttccattgtactcaactccacctaagttgacagtt |
300 |
Q |
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| T |
36931722 |
atcctcttttgatgggatatcaactcctggtgcgaattgtagaaagagaaaggttccaactgattttccattgtactcaactccacctaagttgacagtt |
36931623 |
T |
|
| Q |
301 |
ttggtacggctcgagcaagcggataagcttcttgggtgccctgacttcaattcagatgaaaggaagttgacaggtccggattcttttcttattgaactgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36931622 |
ttggtacggctcgagcaagcggataagcttcttgggtgccctgacttcaattcagatgaaaggaagttgacaggtccggattcttttcttattgaactgg |
36931523 |
T |
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| Q |
401 |
actcaaagctaatgttgttcaaatcaggtatctctctagcatgtttagtattgggatgctcctgcggtgctttcttcgttcttttcttcttctctct |
497 |
Q |
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| T |
36931522 |
actcaaagctaatgttgttcaaatcaggtatctctctagcatgtttagtattgggatgctcctgtggtgctttcttcgttcttttcttcttctctct |
36931426 |
T |
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