View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11964_low_3 (Length: 471)

Name: NF11964_low_3
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11964_low_3
NF11964_low_3
[»] chr3 (18 HSPs)
chr3 (20-464)||(16457187-16457630)
chr3 (198-316)||(5498456-5498574)
chr3 (223-337)||(2550169-2550283)
chr3 (223-333)||(26707862-26707972)
chr3 (223-337)||(1654579-1654693)
chr3 (224-337)||(13845996-13846109)
chr3 (223-337)||(7407737-7407851)
chr3 (199-291)||(27259474-27259566)
chr3 (223-325)||(1613208-1613310)
chr3 (223-301)||(1627966-1628044)
chr3 (198-335)||(9633427-9633564)
chr3 (232-337)||(36035301-36035406)
chr3 (229-337)||(2943197-2943305)
chr3 (267-333)||(26735681-26735747)
chr3 (202-337)||(27713422-27713554)
chr3 (234-303)||(35082990-35083059)
chr3 (215-333)||(28699109-28699227)
chr3 (198-280)||(36034997-36035079)
[»] chr8 (26 HSPs)
chr8 (199-338)||(6403572-6403711)
chr8 (199-323)||(29553608-29553732)
chr8 (198-338)||(31347327-31347467)
chr8 (223-337)||(25638810-25638924)
chr8 (223-337)||(28249058-28249172)
chr8 (223-337)||(45356095-45356209)
chr8 (199-336)||(5650929-5651066)
chr8 (202-321)||(5000661-5000780)
chr8 (223-337)||(17634454-17634568)
chr8 (231-301)||(29345442-29345512)
chr8 (198-335)||(6801815-6801952)
chr8 (223-335)||(5528746-5528858)
chr8 (199-337)||(14997600-14997738)
chr8 (223-337)||(25637647-25637761)
chr8 (354-443)||(6403766-6403857)
chr8 (224-337)||(19369893-19370006)
chr8 (224-301)||(19448452-19448529)
chr8 (224-301)||(19532547-19532624)
chr8 (224-337)||(18766921-18767034)
chr8 (213-316)||(19371273-19371376)
chr8 (199-272)||(7292813-7292885)
chr8 (253-337)||(6223434-6223518)
chr8 (342-417)||(19369769-19369846)
chr8 (342-417)||(19448612-19448689)
chr8 (342-417)||(19532387-19532464)
chr8 (395-464)||(31347854-31347922)
[»] chr5 (25 HSPs)
chr5 (199-321)||(9354388-9354510)
chr5 (199-301)||(9333580-9333682)
chr5 (199-301)||(12042196-12042298)
chr5 (223-337)||(17037546-17037660)
chr5 (223-337)||(5079047-5079161)
chr5 (199-336)||(30786246-30786383)
chr5 (199-283)||(18191886-18191970)
chr5 (235-337)||(40401992-40402094)
chr5 (249-337)||(37233061-37233149)
chr5 (223-337)||(7410827-7410941)
chr5 (223-301)||(31068982-31069059)
chr5 (197-299)||(10869415-10869516)
chr5 (224-337)||(23679445-23679558)
chr5 (224-337)||(23855253-23855366)
chr5 (231-301)||(19985006-19985076)
chr5 (251-337)||(42076078-42076164)
chr5 (198-281)||(31571007-31571090)
chr5 (198-263)||(12004567-12004631)
chr5 (194-316)||(30655180-30655302)
chr5 (342-417)||(23616673-23616750)
chr5 (342-417)||(23848070-23848147)
chr5 (224-258)||(31406413-31406447)
chr5 (199-260)||(17535350-17535411)
chr5 (370-443)||(42076235-42076308)
chr5 (354-417)||(18191757-18191821)
[»] chr6 (26 HSPs)
chr6 (199-336)||(29667899-29668038)
chr6 (223-337)||(16734808-16734922)
chr6 (199-337)||(1942548-1942686)
chr6 (223-337)||(15361718-15361832)
chr6 (199-325)||(23264491-23264619)
chr6 (223-337)||(11936750-11936864)
chr6 (223-337)||(12591836-12591950)
chr6 (232-337)||(11948730-11948835)
chr6 (211-337)||(34374816-34374944)
chr6 (224-337)||(14669329-14669442)
chr6 (197-297)||(9631178-9631278)
chr6 (232-317)||(2941017-2941103)
chr6 (223-301)||(15690441-15690519)
chr6 (203-301)||(23904371-23904469)
chr6 (198-301)||(4485584-4485687)
chr6 (223-301)||(6684097-6684174)
chr6 (224-301)||(17719742-17719819)
chr6 (201-280)||(6673659-6673737)
chr6 (241-304)||(10935797-10935860)
chr6 (233-332)||(30481216-30481315)
chr6 (198-316)||(7913406-7913524)
chr6 (223-334)||(27969903-27970014)
chr6 (232-316)||(6346862-6346946)
chr6 (223-299)||(4591153-4591229)
chr6 (213-302)||(9236022-9236111)
chr6 (342-417)||(17719582-17719659)
[»] chr2 (14 HSPs)
chr2 (204-337)||(11017441-11017574)
chr2 (223-337)||(15513670-15513784)
chr2 (193-337)||(41573366-41573510)
chr2 (199-337)||(24479131-24479269)
chr2 (223-337)||(30267006-30267120)
chr2 (223-337)||(31342699-31342813)
chr2 (223-337)||(44920961-44921074)
chr2 (229-301)||(7718194-7718266)
chr2 (223-301)||(40016594-40016672)
chr2 (200-334)||(7702409-7702543)
chr2 (201-301)||(26734732-26734829)
chr2 (199-335)||(22966502-22966640)
chr2 (198-334)||(15540285-15540421)
chr2 (233-293)||(27151259-27151319)
[»] chr4 (18 HSPs)
chr4 (198-300)||(24559015-24559117)
chr4 (198-301)||(4881088-4881191)
chr4 (223-337)||(43600270-43600384)
chr4 (223-337)||(47066017-47066131)
chr4 (198-337)||(37750973-37751111)
chr4 (223-335)||(4904125-4904237)
chr4 (227-298)||(48464047-48464118)
chr4 (223-336)||(53300354-53300467)
chr4 (224-301)||(1684971-1685048)
chr4 (236-296)||(21539295-21539355)
chr4 (267-336)||(21317485-21317554)
chr4 (197-280)||(26075290-26075373)
chr4 (290-337)||(48465443-48465490)
chr4 (224-273)||(1152048-1152097)
chr4 (198-263)||(4923690-4923755)
chr4 (342-417)||(1152208-1152285)
chr4 (342-417)||(1684811-1684888)
chr4 (199-316)||(2549239-2549356)
[»] chr1 (19 HSPs)
chr1 (199-337)||(12189931-12190069)
chr1 (197-301)||(5911683-5911787)
chr1 (240-337)||(3399642-3399739)
chr1 (199-301)||(28636882-28636984)
chr1 (223-316)||(16222781-16222874)
chr1 (194-300)||(897429-897535)
chr1 (223-337)||(51758756-51758870)
chr1 (229-316)||(13208621-13208708)
chr1 (223-301)||(15214330-15214408)
chr1 (223-285)||(37097375-37097437)
chr1 (223-337)||(18308151-18308265)
chr1 (199-319)||(17112904-17113024)
chr1 (239-302)||(15204613-15204676)
chr1 (232-301)||(1843964-1844033)
chr1 (41-90)||(44134949-44134998)
chr1 (230-334)||(39368626-39368730)
chr1 (213-330)||(20427723-20427840)
chr1 (223-280)||(15193922-15193979)
chr1 (382-435)||(17113134-17113187)
[»] scaffold0576 (1 HSPs)
scaffold0576 (223-337)||(6702-6816)
[»] chr7 (20 HSPs)
chr7 (223-340)||(10022127-10022244)
chr7 (221-337)||(26224961-26225077)
chr7 (199-337)||(26608522-26608660)
chr7 (223-337)||(30089738-30089852)
chr7 (229-316)||(26205419-26205506)
chr7 (223-301)||(4685422-4685500)
chr7 (223-337)||(26621074-26621188)
chr7 (231-337)||(20277343-20277449)
chr7 (199-333)||(26619091-26619223)
chr7 (224-301)||(9242503-9242580)
chr7 (199-333)||(3234306-3234441)
chr7 (234-337)||(16086501-16086604)
chr7 (224-302)||(16170275-16170353)
chr7 (244-293)||(3374325-3374374)
chr7 (249-330)||(27135958-27136039)
chr7 (233-302)||(8241611-8241679)
chr7 (199-260)||(14803120-14803181)
chr7 (199-260)||(15250114-15250175)
chr7 (272-336)||(26701083-26701147)
chr7 (213-316)||(28312669-28312772)
[»] scaffold0684 (1 HSPs)
scaffold0684 (224-301)||(766-843)
[»] scaffold0069 (1 HSPs)
scaffold0069 (229-301)||(40717-40789)
[»] scaffold0002 (1 HSPs)
scaffold0002 (206-297)||(446306-446397)
[»] scaffold0007 (1 HSPs)
scaffold0007 (198-332)||(8723-8855)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Complemental strand, 16457630 - 16457187
Alignment:
Q  20 ccttatggtgaaaaacttagatataaaattttcttgcagtaaattgaagggagctatcatgagttcctgagtttcaaaaatgataacaaactcgaattta 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16457630 ccttatggtgaaaaacttagatataaaattt-cttgcagtaaattgaagggagctatcatgagttcctgagtttcaaaaatgataacaaactcgaattta 16457532  T
Q  120 cttaaatatatccctcactcttggcgtaagcttgatgcttgcaccaaaggtgagagaaatgagagaatttttgatatctcactacaacatgattgagatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16457531 cttaaatatatccctcactcttggcgtaagcttgatgcttgcaccaaagatgagagaaatgagagagtttttgatatctcactacaacatgattgagatt 16457432  T
Q  220 caataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaag 319  Q
    ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  16457431 caacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagctcgtgttactaaaaag 16457332  T
Q  320 cttcagtaacattttatattaataacacttattatatgaccagtaacactaaaaaagtcacttttatattttttgaaaagttgtaaaaagtgtcgcaagg 419  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16457331 cttcagtaacattttatattaataacacttattatatgaccggtaacactaaaaaagtcacttttatattttttgaaaagttgtaaaaagtgtcgcaagg 16457232  T
Q  420 tcgtttagattaaaaattgagaatttgccaaatttgtctctgctt 464  Q
    |||| ||||||||||||||||||| |||||||||||||| |||||    
T  16457231 tcgtctagattaaaaattgagaatctgccaaatttgtctttgctt 16457187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 5498456 - 5498574
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||||||||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||    
T  5498456 tcactacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttagg 5498555  T
Q  298 taaaacttgtgttactaaa 316  Q
    |||||| | ||||||||||    
T  5498556 taaaacctatgttactaaa 5498574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 2550169 - 2550283
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| | ||||||||||||  | ||    
T  2550169 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaagtgttt 2550268  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  2550269 tagttacattttata 2550283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 26707862 - 26707972
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||   | |||||||||| || ||    
T  26707862 taacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagaggtt 26707961  T
Q  323 cagtaacattt 333  Q
    |||||||||||    
T  26707962 cagtaacattt 26707972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 1654579 - 1654693
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||| ||||| | ||||||| ||||  | ||    
T  1654579 taacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaagtgttt 1654678  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  1654679 tagttacattttata 1654693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 337
Target Start/End: Original strand, 13845996 - 13846109
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 323  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||     
T  13845996 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgtttt 13846095  T
Q  324 agtaacattttata 337  Q
    ||| ||||||||||    
T  13846096 agttacattttata 13846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 7407851 - 7407737
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  7407851 taacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 7407752  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  7407751 tagttacattttata 7407737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 27259566 - 27259474
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaatt 291  Q
    ||||||||||| ||||||||| | ||||||||||||| | | ||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  27259566 cactacaacataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 1613310 - 1613208
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| ||||| ||||||||| |   |||||||||| |||||    
T  1613310 taacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttactaaatagctt 1613211  T
Q  323 cag 325  Q
    |||    
T  1613210 cag 1613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 1628044 - 1627966
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||||||| |||||    
T  1628044 taacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaa 1627966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 9633564 - 9633427
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||||||||||| ||||||||| | ||||| ||||||| | | |||||||| | |||||||||||| |||||||||||| |||||| | |||||||||||    
T  9633564 tcactacaacataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttagg 9633465  T
Q  298 taaaacttgtgttactaaaaagcttcagtaacatttta 335  Q
    |||| |   |||||||||| || || ||| ||||||||    
T  9633464 taaagcccctgttactaaagagttttagttacatttta 9633427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 36035301 - 36035406
Alignment:
Q  232 aaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacat 331  Q
    |||||||  |||||||||||||||||  |||| |||||||||||||||| |||  ||||||||||||||| || ||||||||||| ||||| ||| ||||    
T  36035301 aaaattggtactaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagagctttagttacat 36035400  T
Q  332 tttata 337  Q
    ||||||    
T  36035401 tttata 36035406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 337
Target Start/End: Complemental strand, 2943305 - 2943197
Alignment:
Q  229 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaa 328  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||| || |  |||||||||||  | || ||| |    
T  2943305 ttgaaatttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtgttttagtta 2943206  T
Q  329 cattttata 337  Q
    |||||||||    
T  2943205 cattttata 2943197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 26735681 - 26735747
Alignment:
Q  267 taaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattt 333  Q
    ||||||||||||||||||| ||||||||||||||||    |||||||||| ||||||| ||||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaagagcttcaataacattt 26735747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 27713554 - 27713422
Alignment:
Q  202 tacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||| ||| ||||||||| | ||||| || |||| ||||||||| |||| |||   |||||| ||||||||||||||||||| |  |||||||||| |||    
T  27713554 tacagcataattgagatttagtaacatttaaaaaatgtaactaattcaaaaaa---gttactaattaaatttagtaacatttaaataattgttaggcaaa 27713458  T
Q  302 acttgtgttactaaaaagcttcagtaacattttata 337  Q
    || | |||||||||| || || || || ||||||||    
T  27713457 acctatgttactaaatagttttagcaatattttata 27713422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 35082990 - 35083059
Alignment:
Q  234 aattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaac 303  Q
    |||||| || |||||||||||||||||| | | |||||||||||| |||||| |||||||||| ||||||    
T  35082990 aattgttacaaaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaac 35083059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 333
Target Start/End: Complemental strand, 28699227 - 28699109
Alignment:
Q  215 agattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttact 313  Q
    ||||| ||||||| || ||||||||||||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||| | |||||||||    
T  28699227 agatttaataacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcctgtgttact 28699129  T
Q  314 aaaaagcttcagtaacattt 333  Q
    |||    |||||||||||||    
T  28699128 aaatgatttcagtaacattt 28699109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 36034997 - 36035079
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaaca 280  Q
    |||||||||||| ||||| ||  ||| ||| || |||||||  |||||||||||||||||  |||| ||||||||||||||||    
T  36034997 tcactacaacataattgacatctaatgacacttcaaaattggtactaaatcaagaaaaataatactaattaaatttagtaaca 36035079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 199 - 338
Target Start/End: Original strand, 6403572 - 6403711
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||||||| ||||| | |||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6403572 cactacaacatgattaagatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 6403671  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattttatat 338  Q
    ||| |  |||||| ||||||||||||||||||||||||||    
T  6403672 aaagcccgtgttattaaaaagcttcagtaacattttatat 6403711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 199 - 323
Target Start/End: Original strand, 29553608 - 29553732
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |    
T  29553608 cactacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagtt 29553707  T
Q  299 aaaacttgtgttactaaaaagcttc 323  Q
    ||| |  ||||||||||||||||||    
T  29553708 aaagcgcgtgttactaaaaagcttc 29553732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 198 - 338
Target Start/End: Original strand, 31347327 - 31347467
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    ||||| |||||||||||| ||| | |||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||     
T  31347327 tcactgcaacatgattgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttaga 31347426  T
Q  298 taaaacttgtgttactaaaaagcttcagtaacattttatat 338  Q
    |||| | |||||||||||  | |||||||||||||||||||    
T  31347427 taaatcctgtgttactaaccatcttcagtaacattttatat 31347467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 25638810 - 25638924
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||   ||||||||||  | ||    
T  25638810 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaagtgttt 25638909  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  25638910 tagttacattttata 25638924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 28249172 - 28249058
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  28249172 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 28249073  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  28249072 tagttacattttata 28249058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 45356209 - 45356095
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  45356209 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 45356110  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  45356109 tagttacattttata 45356095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 336
Target Start/End: Complemental strand, 5651066 - 5650929
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    |||| |||||| |||||| |||| ||||| ||||||| | | ||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||    
T  5651066 cactgcaacataattgagtttcagtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggt 5650967  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattttat 336  Q
    |||||   |||||| ||||||||| |||  ||||||||    
T  5650966 aaaacccttgttacaaaaaagctttagttgcattttat 5650929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 321
Target Start/End: Original strand, 5000661 - 5000780
Alignment:
Q  202 tacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||||||| ||||||||  | | ||||||||||||||| |||| ||||  |||| ||||||| |||||||||||||||||||||||||| ||||||| ||    
T  5000661 tacaacataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaacatttgagcaatagttaggtgaa 5000760  T
Q  302 acttgtgttactaaaaagct 321  Q
    || |||||||||||| ||||    
T  5000761 acctgtgttactaaagagct 5000780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 17634568 - 17634454
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||| |||||||| |  ||||||||||| |  ||    
T  17634568 taacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaagaaatt 17634469  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  17634468 tagttacattttata 17634454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 29345442 - 29345512
Alignment:
Q  231 gaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||    
T  29345442 gaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaa 29345512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 6801952 - 6801815
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    ||||||||||||   ||||||| | ||||| ||||||| | | |||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||    
T  6801952 tcactacaacatagatgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttagg 6801853  T
Q  298 taaaacttgtgttactaaaaagcttcagtaacatttta 335  Q
    |||| |   |||||||||| || || ||| ||||||||    
T  6801852 taaagcccctgttactaaagagttttagttacatttta 6801815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 5528746 - 5528858
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |  | |||||||||| ||||   |||||||||||| || ||    
T  5528746 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttactaaagagttt 5528845  T
Q  323 cagtaacatttta 335  Q
     ||| ||||||||    
T  5528846 tagttacatttta 5528858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 14997600 - 14997738
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||||||||| ||  | | ||| ||||||||| | ||||| |||||||||||||||||  ||||| |||||||||||||   |||||||||||    
T  14997600 cactacaacatgattgacatctagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggt 14997699  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    |||||   |||||||||| ||||| ||| || |||||||    
T  14997700 aaaacccatgttactaaagagctttagttaccttttata 14997738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 25637647 - 25637761
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||| ||||||| ||||||| ||||||||||| |||| | || ||||||||||||||| |  ||||||||||| |  ||    
T  25637647 taacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaagaattt 25637746  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  25637747 tagttacattttata 25637761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 6403766 - 6403857
Alignment:
Q  354 tatgaccagtaacactaaaaaa--gtcacttttatattttttgaaaagttgt-aaaaagtgtcgcaaggtcgtttagattaaaaattgagaat 443  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||| |||||||||||||| ||||| |||| | ||||||||||||    
T  6403766 tatgaccagtaacactaaaaaaatgtcacatttatattttttgaaaagttgtaaaaaagtgtcgcaaagtcgtctagact-aaaattgagaat 6403857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 19370006 - 19369893
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 323  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | || |||||||||| ||||    ||||||||||| || ||     
T  19370006 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagtttt 19369907  T
Q  324 agtaacattttata 337  Q
    ||| ||||||||||    
T  19369906 agttacattttata 19369893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 19448452 - 19448529
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | || |||||||||| ||||    
T  19448452 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaa 19448529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 19532624 - 19532547
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | || |||||||||| ||||    
T  19532624 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaa 19532547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 337
Target Start/End: Original strand, 18766921 - 18767034
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 323  Q
    |||| ||||||||||||||||||||||||||||| ||| | ||||||||| | |||| |  | |||||||||||||||    ||||||||||| || ||     
T  18766921 aacacttgaaaattgtaactaaatcaagaaaaatattattaattaaattttgcaacactcaaacaattgttaggtaaagtacgtgttactaaagagtttt 18767020  T
Q  324 agtaacattttata 337  Q
    ||| ||||||||||    
T  18767021 agttacattttata 18767034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 19371376 - 19371273
Alignment:
Q  213 tgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgtta 311  Q
    ||||||| | |||||||| ||||||||||||||||||| || ||||||||||  ||| || | ||||||||||| ||| |||||||||||   |||||||    
T  19371376 tgagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgtaacatttga-caaatgttaggtaaagactgtgtta 19371278  T
Q  312 ctaaa 316  Q
    |||||    
T  19371277 ctaaa 19371273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 7292813 - 7292885
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatt 272  Q
    ||||||||||| ||||| ||| ||||||| ||||||||||| ||| ||||| | ||||||||||| ||||||||    
T  7292813 cactacaacataattgacatttaataacacttgaaaattgttactgaatcatg-aaaatgttactaattaaatt 7292885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 6223434 - 6223518
Alignment:
Q  253 aaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    |||| |||||| ||||||||||||||||||||   |||||||||||||| |  ||||||||||| || || ||| ||| ||||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagttttagttacactttata 6223518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 19369846 - 19369769
Alignment:
Q  342 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  19369846 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 19369769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 19448612 - 19448689
Alignment:
Q  342 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  19448612 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 19448689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 19532464 - 19532387
Alignment:
Q  342 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  19532464 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 19532387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 31347854 - 31347922
Alignment:
Q  395 aaaagttgtaaaaagtgtcgcaaggtcgtttagattaaaaattgagaatttgccaaatttgtctctgctt 464  Q
    ||||||||||||||||||| ||| ||||| |||| |||||||||||||| | ||| ||||| || |||||    
T  31347854 aaaagttgtaaaaagtgtc-caaagtcgtctagactaaaaattgagaatctaccacatttgcctttgctt 31347922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 199 - 321
Target Start/End: Complemental strand, 9354510 - 9354388
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  9354510 cactacaacatgattgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggt 9354411  T
Q  299 aaaacttgtgttactaaaaagct 321  Q
    ||| |   |||||||||||||||    
T  9354410 aaagcccatgttactaaaaagct 9354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 9333682 - 9333580
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    |||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9333682 cactacaacatgattgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 9333583  T
Q  299 aaa 301  Q
    |||    
T  9333582 aaa 9333580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 12042298 - 12042196
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||| ||| |||| || ||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  12042298 cactacaacataattaagatccagtaatatttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggt 12042199  T
Q  299 aaa 301  Q
    |||    
T  12042198 aaa 12042196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 17037546 - 17037660
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    ||||||||||| || ||    
T  17037546 taacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttactaaagagttt 17037645  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  17037646 tagttacattttata 17037660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 5079161 - 5079047
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  5079161 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 5079062  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  5079061 tagttacattttata 5079047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 336
Target Start/End: Original strand, 30786246 - 30786383
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||| ||| ||||  | ||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||  |||||||||||    
T  30786246 cactacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggt 30786345  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattttat 336  Q
    |||     ||||||||||||| || ||| |||||||||    
T  30786346 aaatgccttgttactaaaaagatttagtcacattttat 30786383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 18191970 - 18191886
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacattt 283  Q
    |||||||| || ||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18191970 cactacaaaataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaacattt 18191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 40402094 - 40401992
Alignment:
Q  235 attgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacatttt 334  Q
    ||||| ||||||| ||||||||||||||| |||||||||||| || ||||| |||||||||||||||   |||||| |||||||||||||| ||||||||    
T  40402094 attgtgactaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaagtctgtgttgctaaaaagcttcagcaacatttt 40401995  T
Q  335 ata 337  Q
    |||    
T  40401994 ata 40401992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 37233061 - 37233149
Alignment:
Q  249 aagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||| |    |||||||||||||| |||||||||||||||||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaacattttata 37233149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 7410827 - 7410941
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| || ||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||  | ||    
T  7410827 taacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 7410926  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  7410927 tagttacattttata 7410941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 31069059 - 31068982
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  31069059 taacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaaa 31068982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 10869415 - 10869516
Alignment:
Q  197 ctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    ||||||||||||| ||||||||  |   |||||| ||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  10869415 ctcactacaacataattgagatctagatacaattaaaaattgta-ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttag 10869513  T
Q  297 gta 299  Q
    |||    
T  10869514 gta 10869516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 337
Target Start/End: Original strand, 23679445 - 23679558
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 323  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||| | |||||| || ||||| |||| ||||  | ||||||||||| || ||     
T  23679445 aacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagtttt 23679544  T
Q  324 agtaacattttata 337  Q
    ||| ||||||||||    
T  23679545 agttacattttata 23679558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 23855366 - 23855253
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 323  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||| | |||||| || ||||| |||| ||||  | ||||||||||| || ||     
T  23855366 aacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagtttt 23855267  T
Q  324 agtaacattttata 337  Q
    ||| ||||||||||    
T  23855266 agttacattttata 23855253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 19985006 - 19985076
Alignment:
Q  231 gaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||  ||||||||||||||    
T  19985006 gaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaa 19985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 42076078 - 42076164
Alignment:
Q  251 gaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||| ||||     ||||||||||||||||||| || ||||||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaaaagcttcaggaatattttata 42076164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 31571007 - 31571090
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacat 281  Q
    |||||||||||| ||||| ||  | ||||| ||||||||||| | |||| |||||||||||||||| |||||| ||||||||||    
T  31571007 tcactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacat 31571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 12004631 - 12004567
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttact 263  Q
    |||||||||||| ||||| ||| | |||||||||||| || |||||||||||||||||||||||||    
T  12004631 tcactacaacataattgaaatttagtaacaattgaaa-ttctaactaaatcaagaaaaatgttact 12004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 316
Target Start/End: Complemental strand, 30655302 - 30655180
Alignment:
Q  194 tatctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattg 292  Q
    |||| |||||||||||   ||||||| | ||||| || ||||||||||||||||||| || ||||||||||  ||| || | |||||||||||  || ||    
T  30655302 tatcacactacaacatatatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttga-taaatg 30655204  T
Q  293 ttaggtaaaacttgtgttactaaa 316  Q
    ||||||||| |  |||||||||||    
T  30655203 ttaggtaaagccggtgttactaaa 30655180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 23616750 - 23616673
Alignment:
Q  342 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  23616750 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 23616673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 23848147 - 23848070
Alignment:
Q  342 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  23848147 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 23848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 31406447 - 31406413
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatg 258  Q
    |||| ||||||||||||||||||||||||||||||    
T  31406447 aacatttgaaaattgtaactaaatcaagaaaaatg 31406413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 17535350 - 17535411
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgtt 260  Q
    ||||||||||  ||||||||  | ||||  ||||||| ||||||||||||||||||||||||    
T  17535350 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 17535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 42076235 - 42076308
Alignment:
Q  370 aaaaaagtcacttttatattttttgaaaagttgtaaaaagtgtcgcaaggtcgtttagattaaaaattgagaat 443  Q
    ||||| ||||| ||| |||  ||||| ||||||||||||||||||||| || || |||| ||||||||| ||||    
T  42076235 aaaaatgtcacatttttataatttgagaagttgtaaaaagtgtcgcaaagttgtctagactaaaaattgtgaat 42076308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 417
Target Start/End: Complemental strand, 18191821 - 18191757
Alignment:
Q  354 tatgaccagtaacactaaaaaa-gtcacttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||| ||||||||||||||||| || || | |||| ||||||||||||| || ||||||||||||    
T  18191821 tatggccagtaacactaaaaaatgttacatatataatttttgaaaagttctagaaagtgtcgcaa 18191757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 199 - 336
Target Start/End: Complemental strand, 29668038 - 29667899
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaa--gaaaaatgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    ||||||||||| ||||||||    |||||||||||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  29668038 cactacaacataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaacatttgaacaattgttag 29667939  T
Q  297 gtaaaacttgtgttactaaaaagcttcagtaacattttat 336  Q
    ||||| ||||||||| |||| || || |||||||||||||    
T  29667938 gtaaagcttgtgttattaaagagatttagtaacattttat 29667899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 16734808 - 16734922
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |  |||||||||||  | ||    
T  16734808 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaagtgttt 16734907  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  16734908 tagttacattttata 16734922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 1942548 - 1942686
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||| ||| |||||   ||||| |||| |||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||||    
T  1942548 cactacaacataattaagatttggtaacatttgataattgtaactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgctaggt 1942647  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    ||||| | ||||| |||| | ||| ||| ||||||||||    
T  1942648 aaaacctttgttattaaatatctttagttacattttata 1942686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 15361718 - 15361832
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||| | ||    
T  15361718 taacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttt 15361817  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  15361818 tagttacattttata 15361832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 325
Target Start/End: Complemental strand, 23264619 - 23264491
Alignment:
Q  199 cactacaacatgattgagattcaataaca--attgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    ||||||||||| ||||||||  | ||| |  |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| || ||||||||||    
T  23264619 cactacaacataattgagatctagtaagaatattgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttag 23264520  T
Q  297 gtaaaacttgtgttactaaaaagcttcag 325  Q
    ||||||   ||||||||||| ||||||||    
T  23264519 gtaaaatccgtgttactaaagagcttcag 23264491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 11936864 - 11936750
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||| |||| |  |||||||||||  | ||    
T  11936864 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttt 11936765  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  11936764 tagttacattttata 11936750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 12591836 - 12591950
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||  | || ||||||||||||||| |  ||||||||||| || ||    
T  12591836 taacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagagttt 12591935  T
Q  323 cagtaacattttata 337  Q
     ||| ||| ||||||    
T  12591936 tagttacaatttata 12591950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 11948835 - 11948730
Alignment:
Q  232 aaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacat 331  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||| |||| |  |||||||||||  | || ||| ||||    
T  11948835 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacat 11948736  T
Q  332 tttata 337  Q
    ||||||    
T  11948735 tttata 11948730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 34374816 - 34374944
Alignment:
Q  211 attgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagc--aattgttaggtaaaacttgtg 308  Q
    ||||||||| | |||||||| |||| ||||| ||||||||||||||||||||| |||| |||| ||||||||||| |  |||||||||| ||||  ||||    
T  34374816 attgagattaagtaacaattaaaaaatgtaattaaatcaagaaaaatgttactaattatattttgtaacatttgaacaaaattgttaggcaaaatctgtg 34374915  T
Q  309 ttactaaaaagcttcagtaacattttata 337  Q
    |||||||| || || ||||| ||||||||    
T  34374916 ttactaaagagtttgagtaatattttata 34374944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 14669442 - 14669329
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttc 323  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | ||  ||||||||||||||    ||||||||||| || ||     
T  14669442 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagagtttt 14669343  T
Q  324 agtaacattttata 337  Q
    ||| ||||||||||    
T  14669342 agttacattttata 14669329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 9631278 - 9631178
Alignment:
Q  197 ctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    |||| |||||||| ||||||||| | ||||| ||||||| | | ||||||||||||| || |||||| | ||||||||||||||||||| ||||||||||    
T  9631278 ctcattacaacataattgagatttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttag 9631179  T
Q  297 g 297  Q
    |    
T  9631178 g 9631178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 2941017 - 2941103
Alignment:
Q  232 aaaattgtaactaaatcaagaaaa-atgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaa 317  Q
    ||||||||||| ||||||| |||| |||||||| ||||  ||||||||||||||||||| |||||||||||  ||||||||||||||    
T  2941017 aaaattgtaacaaaatcaaaaaaagatgttactaattatgtttagtaacatttgagcaaatgttaggtaaagtttgtgttactaaaa 2941103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 15690441 - 15690519
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |  | |||||||||| ||||    
T  15690441 taacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttagctaaa 15690519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 23904469 - 23904371
Alignment:
Q  203 acaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||||| ||||||||  | ||||| ||||||||||  ||||||| |||||||| |||||| | | ||||||||||||||||| |||||||||||||||    
T  23904469 acaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaa 23904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 4485687 - 4485584
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||||||||||| ||| ||||  | || || ||||||| || |||||||||||| |||||| |||| |||||||||||||| ||||||  ||||||||||    
T  4485687 tcactacaacataattaagatctagtatcagttgaaaaatgcaactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttagg 4485588  T
Q  298 taaa 301  Q
    ||||    
T  4485587 taaa 4485584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 6684097 - 6684174
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||| | || | |||||||||||||    
T  6684097 taacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaacactcgaac-attgttaggtaaa 6684174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 17719819 - 17719742
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| ||| | |||| | || |||||||||| ||||    
T  17719819 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaa 17719742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 6673737 - 6673659
Alignment:
Q  201 ctacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaaca 280  Q
    ||||||||| ||| ||||| | ||||| ||||||| |||||||||||||||||||||||||| ||  |||||||||||||    
T  6673737 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttac-taaaaaatttagtaaca 6673659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 10935860 - 10935797
Alignment:
Q  241 actaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaact 304  Q
    ||||||||| ||||||||||||| |||| ||  |||||||||||| ||||||||||||||||||    
T  10935860 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaact 10935797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 332
Target Start/End: Complemental strand, 30481315 - 30481216
Alignment:
Q  233 aaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacatt 332  Q
    ||||||| |||||||||||||||||||| || ||||||| |||||||| |||| ||| | |||| ||||  |  |||||||||| ||||||| |||||||    
T  30481315 aaattgttactaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaaattttagataaagatcatgttactaaagagcttcaataacatt 30481216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 7913524 - 7913406
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    |||||||||||||  ||||||| | ||||| || ||||||||||||||||||| || ||||||||||  ||| || | |||||||||||| || | ||||    
T  7913524 tcactacaacatgtatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactctttagatcttgtaacatttgag-aaatattag 7913426  T
Q  297 gtaaaacttgtgttactaaa 316  Q
    |||||   ||||||||||||    
T  7913425 gtaaagtctgtgttactaaa 7913406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 27970014 - 27969903
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| |||||||||||||| ||| ||||||| ||||||||  || ||||||| ||||||| | ||| |||||||||||   | |||||||||||  |||    
T  27970014 taacatttgaaaattgtaaccaaagcaagaaatatgttactatttcaatttagcaacatttcaacaaatgttaggtaaagtctatgttactaaaagactt 27969915  T
Q  323 cagtaacatttt 334  Q
    ||  ||||||||    
T  27969914 caacaacatttt 27969903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 6346946 - 6346862
Alignment:
Q  232 aaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaa 316  Q
    ||||||||||||||||||| || ||||||||||  |||||||| |||||||||||  || ||||||||||| | | ||||||||||    
T  6346946 aaaattgtaactaaatcaaaaataaatgttactatttaaattttgtaacatttga-taaatgttaggtaaagcctatgttactaaa 6346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 4591153 - 4591229
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggta 299  Q
    ||||| ||||||||| | ||||||||||||||||||||||  |||||| | | |||| ||||  |||||||||||||    
T  4591153 taacatttgaaaattattactaaatcaagaaaaatgttaccgattaaaatcaataacctttgtacaattgttaggta 4591229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 9236022 - 9236111
Alignment:
Q  213 tgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaa 302  Q
    ||||||| | ||||| || ||||| ||||||||||||| || |||| |||||  |||||||| ||||||||||| ||| ||||||||||||    
T  9236022 tgagatttagtaacacttcaaaatcgtaactaaatcaaaaacaaatattactatttaaattttgtaacatttga-caaatgttaggtaaaa 9236111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 17719659 - 17719582
Alignment:
Q  342 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  17719659 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 17719582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 337
Target Start/End: Original strand, 11017441 - 11017574
Alignment:
Q  204 caacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaac 303  Q
    |||||| ||||||||  | |||||||||||||  || ||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||      
T  11017441 caacataattgagatctagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagt 11017540  T
Q  304 ttgtgttactaaaaagcttcagtaacattttata 337  Q
      ||||||||||||||||||||||||| ||||||    
T  11017541 ccgtgttactaaaaagcttcagtaacactttata 11017574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 15513670 - 15513784
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    |||||||| |||||||||| |||||||||||||||||||||  |||||||| |||||| |||| ||||||||||||||| || |||||||||||||| ||    
T  15513670 taacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaaaagatt 15513769  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  15513770 tagttacattttata 15513784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 337
Target Start/End: Original strand, 41573366 - 41573510
Alignment:
Q  193 atatctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattg 292  Q
    |||| |||||||||||  ||||||||| | ||||| |  |||| ||||||||||||||||||||||||||| |||||||||||||||| || | ||||||    
T  41573366 atatatcactacaacaaaattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattg 41573465  T
Q  293 ttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    ||||||||| |  |||||||||||   ||||| ||||||||||||    
T  41573466 ttaggtaaaccccgtgttactaaattacttcaataacattttata 41573510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 24479131 - 24479269
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||| ||||| ||||||||  | ||||| ||||||||| | |||||||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||    
T  24479131 cactataacataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggt 24479230  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    ||| || ||||||||||| ||||| ||| | ||||||||    
T  24479231 aaagctcgtgttactaaagagctttagttatattttata 24479269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 30267006 - 30267120
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||  ||| ||||||||||||||| |  ||||||| ||| || ||    
T  30267006 taacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagttt 30267105  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  30267106 tagttacattttata 30267120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 31342813 - 31342699
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||| |||| |  |||||||||||  | ||    
T  31342813 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttt 31342714  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  31342713 tagttacattttata 31342699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 44920961 - 44921074
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||  | | ||||||||||||||| || ||||||||||| || ||    
T  44920961 taacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaagagttt 44921059  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  44921060 tagttacattttata 44921074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 7718194 - 7718266
Alignment:
Q  229 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||  ||| |||||||||| ||||    
T  7718194 ttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaa 7718266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 40016594 - 40016672
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||| ||||||||| | | ||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  40016594 taacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaa 40016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 334
Target Start/End: Original strand, 7702409 - 7702543
Alignment:
Q  200 actacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggta 299  Q
    |||||||||| ||||| ||  | |||||  |||||||| | ||||||| || |||||||||| | |||||| |||||||||||||  |||||||||||||    
T  7702409 actacaacataattgacatctagtaacacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggta 7702508  T
Q  300 aaacttgtgttactaaaaagcttcagtaacatttt 334  Q
    || |   | |||||||| ||||| ||| |||||||    
T  7702509 aagcccatattactaaagagctttagttacatttt 7702543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 26734732 - 26734829
Alignment:
Q  201 ctacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaa 300  Q
    ||||| ||| ||||||||  ||||||| |||||||||||   ||||||||||||||  ||| | ||||||||||| || ||||||  |||||||||||||    
T  26734732 ctacagcataattgagatataataacatttgaaaattgt---taaatcaagaaaaaacttattaattaaatttagcaatatttgaataattgttaggtaa 26734828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 22966502 - 22966640
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaa--aaatgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    |||||||| || ||||||||| | ||||| ||||||| | | ||||||| || ||  |||| ||||| || ||||||||| |||||| | ||||||||||    
T  22966502 cactacaatataattgagatttagtaacacttgaaaactattactaaataaaaaataaaatattactaatgaaatttagttacatttaaacaattgttag 22966601  T
Q  297 gtaaaacttgtgttactaaaaagcttcagtaacatttta 335  Q
    ||||| |   |||||||||| | ||| ||| ||||||||    
T  22966602 gtaaagcccctgttactaaagacctttagttacatttta 22966640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 334
Target Start/End: Complemental strand, 15540421 - 15540285
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaa-atgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    ||||||| |||| |||||| || | ||||| ||||||| | | |||||||||  |||| |||||||| |||| || ||||||||||| | |||||| |||    
T  15540421 tcactacgacataattgagctttagtaacatttgaaaagtattactaaatcacaaaaatatgttactaattatatctagtaacatttaa-caattgatag 15540323  T
Q  297 gtaaaacttgtgttactaaaaagcttcagtaacatttt 334  Q
    |||||  ||||| |||||||  |  |||||||||||||    
T  15540322 gtaaagtttgtggtactaaacggtatcagtaacatttt 15540285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 27151319 - 27151259
Alignment:
Q  233 aaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgt 293  Q
    ||||||| ||||||||||||||||||| ||| |||||| ||||| ||| |||  |||||||    
T  27151319 aaattgttactaaatcaagaaaaatgtcactaattaaaattagtgacacttgtacaattgt 27151259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 24559117 - 24559015
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||||| ||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  24559117 tcactagaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttagg 24559018  T
Q  298 taa 300  Q
    |||    
T  24559017 taa 24559015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 4881191 - 4881088
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||||||||||| ||||| || || ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||   ||||||||||    
T  4881191 tcactacaacataattgacatccagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttagg 4881092  T
Q  298 taaa 301  Q
    ||||    
T  4881091 taaa 4881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 43600270 - 43600384
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || | |||| ||||||||||||||| |  |||||||||||  | ||    
T  43600270 taacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaagtgttt 43600369  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  43600370 tagttacattttata 43600384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 47066131 - 47066017
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||  ||| ||||||||||||||| |  ||||||| ||| || ||    
T  47066131 taacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagttt 47066032  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  47066031 tagttacattttata 47066017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 198 - 337
Target Start/End: Complemental strand, 37751111 - 37750973
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||||||||||| ||||| || || |||||  |||||||||| |||||||||| |||||||||||| |||||| | ||||||||||| |||||||||||     
T  37751111 tcactacaacataattgacatccagtaacatatgaaaattgtcactaaatcaa-aaaaatgttactaattaaaatcagtaacatttgcgcaattgttaga 37751013  T
Q  298 taaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    |||| |   ||||||||| |||||| ||| ||||||||||    
T  37751012 taaagccaatgttactaagaagctttagttacattttata 37750973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 4904237 - 4904125
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| || |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||| |   ||||||||||  ||||    
T  4904237 taacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaagcacttgttactaaagtgctt 4904138  T
Q  323 cagtaacatttta 335  Q
     ||| ||||||||    
T  4904137 tagttacatttta 4904125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 48464047 - 48464118
Alignment:
Q  227 aattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||||| ||||||| || |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  48464047 aattgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 336
Target Start/End: Original strand, 53300354 - 53300467
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||  | | ||||||||||||||| |  ||||||| ||| || ||    
T  53300354 taacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttaccaaagagttt 53300453  T
Q  323 cagtaacattttat 336  Q
     ||| |||||||||    
T  53300454 tagttacattttat 53300467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 1685048 - 1684971
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | || |||||||||| ||||    
T  1685048 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaa 1684971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 21539355 - 21539295
Alignment:
Q  236 ttgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||    
T  21539355 ttgtaactaaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttag 21539295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 21317485 - 21317554
Alignment:
Q  267 taaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttat 336  Q
    ||||||||||||||||| | |||||||||||||||   ||||||||||||| |||||| |||||||||||    
T  21317485 taaatttagtaacatttcaacaattgttaggtaaaggctgtgttactaaaatgcttcactaacattttat 21317554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 280
Target Start/End: Complemental strand, 26075373 - 26075290
Alignment:
Q  197 ctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaaca 280  Q
    |||| |||||||| ||||| ||  ||||||||||||||||||| |||| ||||||||||  |||||| | ||||||||||||||    
T  26075373 ctcattacaacataattgaaatctaataacaattgaaaattgttactagatcaagaaaatggttactaagtaaatttagtaaca 26075290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 48465443 - 48465490
Alignment:
Q  290 ttgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  48465443 ttgttaggtaaaatttgtgttactaaaaagtttcagtaacattttata 48465490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 1152048 - 1152097
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaattt 273  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  1152048 aacacttgaaaattgtaactaaattaagaaaaatgttactaattaaattt 1152097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 4923755 - 4923690
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttact 263  Q
    |||||||||||| ||| | || || ||||| || |||||||| |||||||||||||||||||||||    
T  4923755 tcactacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttact 4923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 1152208 - 1152285
Alignment:
Q  342 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  1152208 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 1152285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 1684888 - 1684811
Alignment:
Q  342 taacacttattatatgaccagtaacactaaaaaagtc--acttttatattttttgaaaagttgtaaaaagtgtcgcaa 417  Q
    |||||||| || ||| || ||||||| |||||||||   || |||||| ||||||| |||||||||||||||||||||    
T  1684888 taacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaa 1684811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 2549239 - 2549356
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||||||||||   ||||||| | ||||| ||  ||||||||| |||||||| || ||||||||||  |||||| | |||| |||||| ||| |||||||    
T  2549239 cactacaacatatatgagatttagtaacacttctaaattgtaattaaatcaaaaacaaatgttactatttaaatcttgtaatatttga-caaatgttagg 2549337  T
Q  298 taaaacttgtgttactaaa 316  Q
    ||||||  |||||||||||    
T  2549338 taaaacccgtgttactaaa 2549356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 12189931 - 12190069
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||| ||||||| | |  ||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  12189931 cactacaacataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggt 12190030  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    ||| |  ||||||||||| || || |||||  |||||||    
T  12190031 aaagcccgtgttactaaagagttttagtaattttttata 12190069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 5911787 - 5911683
Alignment:
Q  197 ctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttag 296  Q
    |||||||||||||||||  |||  | ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  5911787 ctcactacaacatgattatgatatagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttag 5911688  T
Q  297 gtaaa 301  Q
    |||||    
T  5911687 gtaaa 5911683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 3399642 - 3399739
Alignment:
Q  240 aactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  | |||||||||| |||||| |||||| ||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaatctatgttactaaatagcttcggtaacactttata 3399739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 28636882 - 28636984
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||| ||| ||||  | ||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||  |||||||||||    
T  28636882 cactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggt 28636981  T
Q  299 aaa 301  Q
    |||    
T  28636982 aaa 28636984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 16222781 - 16222874
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaa 316  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||  |||||||||||||| |  |||||||||||    
T  16222781 taacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaa 16222874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 897429 - 897535
Alignment:
Q  194 tatctcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgt 293  Q
    |||||||||||||||| ||| ||||  | | ||| ||||||||||| ||||||| |||||||||||| || |||||||||||||||| |||| |||||||    
T  897429 tatctcactacaacataattaagatatagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgt 897528  T
Q  294 taggtaa 300  Q
    |||||||    
T  897529 taggtaa 897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 51758756 - 51758870
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||| | || ||||| ||||||||| || || |||||||| || ||    
T  51758756 taacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattactaaagagttt 51758855  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  51758856 tagttacattttata 51758870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 13208621 - 13208708
Alignment:
Q  229 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaa 316  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||||||| || |||| | |||||||||||||||  |||||||||||    
T  13208621 ttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaa 13208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 15214330 - 15214408
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||| |||||||| ||||||    
T  15214330 taacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaaa 15214408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 37097437 - 37097375
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttga 285  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  37097437 taacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttga 37097375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 18308151 - 18308265
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||| ||||||||||||||||||||||  |||| | ||| ||||||||   ||||||||||||||| | ||||||||| ||  ||||    
T  18308151 taacatttgaaaattgttactaaatcaagaaaaatgttacagattacaattattaacatttctacaattgttaggtaaagcctgtgttactgaagggctt 18308250  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  18308251 tagttacattttata 18308265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 17112904 - 17113024
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||| ||||| ||  | ||| ||||||||||||| |||||||||||||||||  ||||  |||||||| |||||| |||| |||||||||| |    
T  17112904 cactacaacataattgaaatctagtaataattgaaaattgttactaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgttagtt 17113003  T
Q  299 aaaacttgtgttactaaaaag 319  Q
    ||| ||  |||||||| ||||    
T  17113004 aaagctcatgttactataaag 17113024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 15204613 - 15204676
Alignment:
Q  239 taactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaa 302  Q
    |||||||||||||||||||||| || | |||||||||||||| |||| ||||||||||||||||    
T  15204613 taactaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggtaaaa 15204676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 1843964 - 1844033
Alignment:
Q  232 aaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||||||||||  |  ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  1843964 aaaattgtaactggaataagaaaaatgttactgattgaatttagtaacatttgaacaattgttaggtaaa 1844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 44134949 - 44134998
Alignment:
Q  41 tataaaattttcttgcagtaaattgaagggagctatcatgagttcctgag 90  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  44134949 tataaaactttgttgcagtaaattgaagggagctatcatgagttcctgag 44134998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 230 - 334
Target Start/End: Complemental strand, 39368730 - 39368626
Alignment:
Q  230 tgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaac 329  Q
    |||||| ||| ||||||||||||||||||||||| |||||| ||||| ||||||   ||||||||||| ||| |   || ||||||| ||||||||| ||    
T  39368730 tgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttaggcaaagcacatgctactaaagagcttcagttac 39368631  T
Q  330 atttt 334  Q
    |||||    
T  39368630 atttt 39368626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 20427840 - 20427723
Alignment:
Q  213 tgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgtta 311  Q
    ||||||| | |||||||| ||||||||||||||||||| || ||||||||||  ||| || | ||||| ||||| ||| |||||||||||||  ||||||    
T  20427840 tgagatttagtaacaattcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacttttga-caaatgttaggtaaaacccgtgtta 20427742  T
Q  312 ctaaaaagcttcagtaaca 330  Q
    ||||| |  ||||||||||    
T  20427741 ctaaataatttcagtaaca 20427723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 15193922 - 15193979
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaaca 280  Q
    ||||| |||||||| | ||| |||||||||||||||||||| |||||||||| |||||    
T  15193922 taacacttgaaaatagcaacgaaatcaagaaaaatgttactaattaaatttattaaca 15193979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 17113134 - 17113187
Alignment:
Q  382 tttatattttttgaaaagttgtaaaaagtgtcgcaaggtcgtttagattaaaaa 435  Q
    |||||| ||| ||||||||||||||||||||||||| || || |||| ||||||    
T  17113134 tttataatttgtgaaaagttgtaaaaagtgtcgcaaagttgtctagactaaaaa 17113187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 6702 - 6816
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |  |||||||||||| | ||    
T  6702 taacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttt 6801  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  6802 tagttacattttata 6816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 340
Target Start/End: Original strand, 10022127 - 10022244
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||| ||||||||||  ||| ||||||||||||||| || ||||||||||| |  ||    
T  10022127 taacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttactaaagaattt 10022226  T
Q  323 cagtaacattttatatta 340  Q
     ||| |||||||||||||    
T  10022227 tagttacattttatatta 10022244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 26225077 - 26224961
Alignment:
Q  221 aataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagc 320  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||| ||||||||| |  ||||||||||| ||     
T  26225077 aataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaagagt 26224978  T
Q  321 ttcagtaacattttata 337  Q
    || |||  |||||||||    
T  26224977 tttagtttcattttata 26224961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 199 - 337
Target Start/End: Complemental strand, 26608660 - 26608522
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||| ||||| ||  | ||||| ||||||||||| |  |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |    
T  26608660 cactacaacataattgacatctagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagat 26608561  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattttata 337  Q
    ||| |   |||||||||| ||||| |||  |||||||||    
T  26608560 aaagcccatgttactaaagagctttagttgcattttata 26608522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 30089738 - 30089852
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||| |   |||||||||| |||||    
T  30089738 taacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagagctt 30089837  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  30089838 tagttacattttata 30089852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 26205506 - 26205419
Alignment:
Q  229 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaa 316  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||  ||||| |||||||| || |||||||||||    
T  26205506 ttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaaagctggtgttactaaa 26205419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 4685500 - 4685422
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||| |||||||||||||||    
T  4685500 taacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaa 4685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 26621188 - 26621074
Alignment:
Q  223 taacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagctt 322  Q
    ||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||| | |||||||||| |||||    |||||||||| |||||    
T  26621188 taacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaagccatgttactaaagagctt 26621089  T
Q  323 cagtaacattttata 337  Q
     ||| ||||||||||    
T  26621088 tagttacattttata 26621074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 337
Target Start/End: Complemental strand, 20277449 - 20277343
Alignment:
Q  231 gaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaaca 330  Q
    |||||||||||||||||||| |||||| ||| | ||||||||||||||||||| | ||||||||||||||| |   |||||||||| ||||| ||| |||    
T  20277449 gaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagagctttagttaca 20277350  T
Q  331 ttttata 337  Q
    || ||||    
T  20277349 ttatata 20277343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 199 - 333
Target Start/End: Complemental strand, 26619223 - 26619091
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggt 298  Q
    ||||||||||| ||||| ||  | ||||| |||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||    
T  26619223 cactacaacataattgacatctagtaacacttgaaa-ttgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggt 26619126  T
Q  299 aaaacttgtgttactaaaaagcttcagtaacattt 333  Q
    ||| | | |||||||||| | ||| ||| ||||||    
T  26619125 aaatcctatgttactaaagaactttagttacattt 26619091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 9242580 - 9242503
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||| |||||||||| ||||    
T  9242580 aacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaa 9242503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 333
Target Start/End: Original strand, 3234306 - 3234441
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaa-ttgttagg 297  Q
    ||||||| ||| ||| ||||| | ||||| ||||||| ||||||||||| || ||||||| |||| | | ||||||||||||||||| ||| || |||||    
T  3234306 cactacagcataattaagatttagtaacagttgaaaaatgtaactaaataaaaaaaaatggtactaaattaatttagtaacatttgaccaatttattagg 3234405  T
Q  298 taaaacttgtgttactaaaaagcttcagtaacattt 333  Q
    ||||    ||||||||||| ||||||||||||||||    
T  3234406 taaagtccgtgttactaaatagcttcagtaacattt 3234441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 337
Target Start/End: Original strand, 16086501 - 16086604
Alignment:
Q  234 aattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattt 333  Q
    |||||| | |||||||  |||| ||||||| |||||||||| ||||||||||  |||||||||||||| ||  ||||||| || ||||||||||||||||    
T  16086501 aattgttattaaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaaagctcatgttacttaatagcttcagtaacattt 16086600  T
Q  334 tata 337  Q
    ||||    
T  16086601 tata 16086604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 16170275 - 16170353
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaa 302  Q
    |||| |||||||||||||| ||||||  |||| ||||||| |||||||||||||||| || | ||||||||||||||||    
T  16170275 aacacttgaaaattgtaaccaaatcacaaaaagtgttactaattaaatttagtaacacttaaacaattgttaggtaaaa 16170353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 3374325 - 3374374
Alignment:
Q  244 aaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgt 293  Q
    |||||||||||||||||| | |||||||| |||||||||||| |||||||    
T  3374325 aaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 27135958 - 27136039
Alignment:
Q  249 aagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaaca 330  Q
    ||||||||||||| | |||| || || |||||||||| |||||||||| |||| | |||||||||||| || ||| ||||||    
T  27135958 aagaaaaatgttattgattatatctaataacatttgaacaattgttagataaagcctgtgttactaaagagtttcggtaaca 27136039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 8241611 - 8241679
Alignment:
Q  233 aaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaa 302  Q
    ||||||||||||||| ||||||| ||||||| ||| |||||| ||| |||||| || ||||||| |||||    
T  8241611 aaattgtaactaaatgaagaaaa-tgttactgattgaatttaataatatttgaacagttgttagataaaa 8241679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 14803181 - 14803120
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgtt 260  Q
    ||||||||||  ||||||||  | ||||  ||||||| ||||||||||||||||||||||||    
T  14803181 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 14803120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 15250175 - 15250114
Alignment:
Q  199 cactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgtt 260  Q
    ||||||||||  ||||||||  | ||||  ||||||| ||||||||||||||||||||||||    
T  15250175 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 15250114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 26701083 - 26701147
Alignment:
Q  272 ttagtaacatttgagcaattgttaggtaaaacttgtgttactaaaaagcttcagtaacattttat 336  Q
    ||||||||| |||  ||||||||||||||| |  ||||||||||| | ||||||||||| |||||    
T  26701083 ttagtaacagttggccaattgttaggtaaagcccgtgttactaaataacttcagtaacactttat 26701147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 28312669 - 28312772
Alignment:
Q  213 tgagattcaataacaattgaaaattgtaactaaatcaagaa-aaatgttacttattaaatttagtaacatttgagcaattgttaggtaaaacttgtgtta 311  Q
    ||||||| | |||||||| ||||||| ||||||||||| || ||||||||||  ||| || | ||||||||| | ||| ||||||||||| |  ||||||    
T  28312669 tgagatttagtaacaattcaaaattgcaactaaatcaaaaacaaatgttactatttagatcttgtaacatttca-caaatgttaggtaaagcccgtgtta 28312767  T
Q  312 ctaaa 316  Q
    |||||    
T  28312768 ctaaa 28312772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 843 - 766
Alignment:
Q  224 aacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||| | |||| | || |||||||||| ||||    
T  843 aacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaa 766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 40789 - 40717
Alignment:
Q  229 ttgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttaggtaaa 301  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| | |||| | || |||||||||| ||||    
T  40789 ttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaa 40717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 446397 - 446306
Alignment:
Q  206 acatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||| ||||||||  | ||||||| ||| |||||||||||||||   ||| ||||||  ||||||||| ||||||||||| |||||||||||    
T  446397 acataattgagatctagtaacaatcgaagattgtaactaaatcatacaaattgttaccaattaaatttggtaacatttgaacaattgttagg 446306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 8723 - 8855
Alignment:
Q  198 tcactacaacatgattgagattcaataacaattgaaaattgtaactaaatcaagaaaaatgttacttattaaatttagtaacatttgagcaattgttagg 297  Q
    |||||||||||| ||| ||||| | ||||| ||||||| ||||||||||| ||  ||||||||||| | | ||| ||||||||||| | ||||| || ||    
T  8723 tcactacaacataattaagatttagtaacagttgaaaaatgtaactaaat-aaacaaaatgttactaaatgaatatagtaacatttaaccaattatttgg 8821  T
Q  298 taaaacttgtgttactaaaaagcttcagtaacatt 332  Q
      ||||   |||||||||| |||||||||||||||    
T  8822 -caaacccctgttactaaatagcttcagtaacatt 8855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University