View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11964_low_4 (Length: 470)
Name: NF11964_low_4
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11964_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 455
Target Start/End: Original strand, 10057450 - 10057893
Alignment:
| Q |
14 |
atgaacaaattcatataaaagcggattaaacaataaattttagattataaatcatgtttagagttcaaagatacaaatctcagtctaaagttgaaattca |
113 |
Q |
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| T |
10057450 |
atgaacaaattcatataaaagcggattaaacaataaattttagattataaatcatgtttagagttaaaagatacaaatctcagttttaagttgaaattca |
10057549 |
T |
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| Q |
114 |
ttcaaatattccattatatgcattgatctagatannnnnnnnnn--cttgcttcaattttcaggtacatcgcgacaaggacttaaaattttcagaatcat |
211 |
Q |
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| T |
10057550 |
ttcaaatattccattatatacattgatatagatttttttttttcttctggcttcaattttcaggtacatcgcggcaaggacttaaaattttcagaatcat |
10057649 |
T |
|
| Q |
212 |
agcattatgcgttactggaccagctctaatctttgttattctaatggcaagttgtgtgtgctacaatgatagaataggcaacattagcagaagtgctgct |
311 |
Q |
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| T |
10057650 |
agcattatgcgttactggaccagctctaatctttgttattctaatggcaagttgtgtgtgctacaatgatagaataggcaacattagcagaagtgctgct |
10057749 |
T |
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| Q |
312 |
tctcggtcagcaccagcggcaatatcaccgcaacctgaagccacagtaattgcaggtttagatgaatccacaattgaatcttatgagaaagtgattattg |
411 |
Q |
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| T |
10057750 |
tctcggtcagcaccagcggcaatatcaccgcaacctgaagccacggtaattgcaggtttagatgaatccacaattgaatcttatgagaaagtaattattg |
10057849 |
T |
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| Q |
412 |
gggagagtcgacgtgttcctggaccgaacgacggatgttgttgg |
455 |
Q |
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| T |
10057850 |
gggagagtcgacgtgttcctggaccgaacgatggatgttgttgg |
10057893 |
T |
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