View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11964_low_5 (Length: 274)
Name: NF11964_low_5
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11964_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 18479664 - 18479445
Alignment:
| Q |
37 |
ataaggatcataaacaagtaagaatactaagaattcaataaagtggagaatataaaagaggacgtgcctacgtacaagaagactattaa-ttactcaaaa |
135 |
Q |
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| T |
18479664 |
ataaggatcataaacaagtaagaatactaagaattcaataaagtggagaatattaaagagcacgtgcctacgtacaagaagactattaaattactcaaaa |
18479565 |
T |
|
| Q |
136 |
aatgccaagctagcatcaaaattgtacattccatttccattgaagtccatgaaagtgtcaccattgaaagaatctccaaatgcatccaatgccaccctta |
235 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18479564 |
aatgccaagcttgcatcaaaattgtacattccatttccattgaagtccatgaaagtgtcaccattgaaagaatctccaaatgcatccaatgccaccatta |
18479465 |
T |
|
| Q |
236 |
gatcatcatcaccttgcaat |
255 |
Q |
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||| |||||||||||||||| |
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| T |
18479464 |
gataatcatcaccttgcaat |
18479445 |
T |
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