View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11964_low_6 (Length: 271)
Name: NF11964_low_6
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11964_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 39852206 - 39851953
Alignment:
| Q |
15 |
gatggcatccctgtcaaagatatacgaatcaattggtcgacttat-acaaataatgaataaacaactcaccgttgatcaaatgttttaggtgtattgtca |
113 |
Q |
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| T |
39852206 |
gatggcatccctgtcaaagatatacgaatcaattagtcgactttttacaaataatgaataaacaactcaccgttgatcaaatgttttaggagtattgtca |
39852107 |
T |
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| Q |
114 |
cgcaaattgttttcagtatatgctgataacatgaagnnnnnnnntttagaaactaaacataatgccaagccaagaagcaacaatgtttatggaattaaag |
213 |
Q |
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| T |
39852106 |
cgcaaattgttttcagtatatgctgataacatgaa----aaaaaattagaaactaaacataaagccaagccaagaagcaacaatgtttatggaattaaag |
39852011 |
T |
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| Q |
214 |
tcaggtgcagaggtacctcaattgagaatcacttaatatattaaatgttggaaaagac |
271 |
Q |
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| T |
39852010 |
tcaggtgcagaggtacctcaattgagaatcacttaatatattaaatgttggaaaagac |
39851953 |
T |
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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 43187404 - 43187318
Alignment:
| Q |
59 |
tacaaataatgaataaacaactcaccgttgatcaaatgttttaggtgtattgtcacgcaaattgttttcagtatatgctgataacat |
145 |
Q |
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| T |
43187404 |
tacaaataatgaataaacaactcaccgttgatcaaatgtttcaggagtattgtcacgcaaattgttttcagtatctgcagataacat |
43187318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 43208199 - 43208114
Alignment:
| Q |
60 |
acaaataatgaataaacaactcaccgttgatcaaatgttttaggtgtattgtcacgcaaattgttttcagtatatgctgataacatg |
146 |
Q |
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| T |
43208199 |
acaaataatgaataaacaactcaccgttgatcaaatgttttaggagtattgtcgcgcaaattgttttc-gtatctgcagataacatg |
43208114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 43187236 - 43187173
Alignment:
| Q |
204 |
ggaattaaagtcaggtgcagaggtacctcaattgagaatcacttaatatattaaatgttggaaa |
267 |
Q |
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| T |
43187236 |
ggaattaaaatcaggtgcagaggcatgtcaagagagaatcacttaatatattaaatgatggaaa |
43187173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 43189410 - 43189331
Alignment:
| Q |
66 |
aatgaataaacaactcaccgttgatcaaatgttttaggtgtattgtcacgcaaattgttttcagtatatgctgataacat |
145 |
Q |
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| T |
43189410 |
aatgaataaacagctcaccttgggtcaaatgtttcaggagtattttaaagcaaattgttttcagtatctgcagttaacat |
43189331 |
T |
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