View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11964_low_8 (Length: 243)
Name: NF11964_low_8
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11964_low_8 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 15885169 - 15884944
Alignment:
| Q |
18 |
aggaaacagttcacctatgtcaaaacctcctgcaattgattctcccttccccaaagacgtgaactcttcttggtctttgcatttgtttccaaatgcagcc |
117 |
Q |
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| T |
15885169 |
aggaaacagttcacctatgtcaaaacctccagcaattgattctcccttccccaaagacgcgaactcttcttggtctttgcatttgtttccaaatgcagcc |
15885070 |
T |
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| Q |
118 |
cttgaaaggatagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15885069 |
cttgaaaggatagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacactt |
15884970 |
T |
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| Q |
218 |
cttctcttattggatggaatgaactc |
243 |
Q |
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| T |
15884969 |
cttctcttattggatggaatgaactc |
15884944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 12637879 - 12638103
Alignment:
| Q |
18 |
aggaaacagttcacctatgtcaaaacctcctgcaattgattctcccttccccaaagacgtgaactcttcttggtctttgcatttgtttccaaatgcagcc |
117 |
Q |
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|||||||| |||||||||||||||||||||| ||| ||||||||| || |||| || || || ||||||| ||||||||||||||||||| |||||| |
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| T |
12637879 |
aggaaacaattcacctatgtcaaaacctcctccaactgattctccatttgccaacgatacgagctgttcttggcctttgcatttgtttccaaacgcagcc |
12637978 |
T |
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| Q |
118 |
cttgaaaggatagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacactt |
217 |
Q |
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| T |
12637979 |
cttgtagtaatagtcataattgatgtaactacggcttgagtgatgttgatgggtgatccttgttgtgaatcaatacttttgatgagattggtgaactctt |
12638078 |
T |
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| Q |
218 |
cttctcttattggatggaatgaact |
242 |
Q |
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| T |
12638079 |
cttctcttataggccggaatgaact |
12638103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 12610879 - 12611091
Alignment:
| Q |
18 |
aggaaacagttcacctatgtcaaaacctcctgcaattgattctcccttccccaaagacgtgaactcttcttggtctttgcatttgtttccaaatgcagcc |
117 |
Q |
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| T |
12610879 |
aggaaataattcagctatgtcaaaacctcctgcaattgattctccatctccaatagatccaaactcttctctgcctttgcctttgctgccaaacgcagcc |
12610978 |
T |
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| Q |
118 |
cttgaaaggatagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacactt |
217 |
Q |
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| T |
12610979 |
tttgtaatgatagaaaatgttgatgaaactacaagctgagttatattgacgggcgacccttgttgcgaatcaatcttttttacgagattgttaagctctt |
12611078 |
T |
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| Q |
218 |
cttctcttattgg |
230 |
Q |
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| T |
12611079 |
cttctcttattgg |
12611091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 63031 - 63234
Alignment:
| Q |
37 |
tcaaaacctcctgcaattgattctcccttccccaaagacgtgaactcttcttggtctttgcatttgtttccaaatgcagcccttgaaaggatagcaaatg |
136 |
Q |
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| T |
63031 |
tcaaaacctcctccaattgatcctatatttcccaatgacgcaaactgttcttgggctttgcatttgtcgccaaacgcagcccttgaaatgatagaaatca |
63130 |
T |
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| Q |
137 |
tcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttctcttattggatggaa |
236 |
Q |
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| T |
63131 |
ttgttgtaagtacaagttcagtgatgttgacaggcaatccttgttgcaaatcaatccttttgatgagattggagagctcttcttctcttattggccggaa |
63230 |
T |
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| Q |
237 |
tgaa |
240 |
Q |
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|||| |
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| T |
63231 |
tgaa |
63234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 23018180 - 23018220
Alignment:
| Q |
84 |
ttcttggtctttgcatttgtttccaaatgcagcccttgaaa |
124 |
Q |
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| T |
23018180 |
ttcttggtctttgcatttattgccaaaggcagcccttgaaa |
23018220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 23025269 - 23025337
Alignment:
| Q |
156 |
agtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttctct |
224 |
Q |
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| T |
23025269 |
agtgaggttgatgggtgatccttccttcgaagcaatccatttgacaagattggagaactcttcttctct |
23025337 |
T |
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