View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11964_low_9 (Length: 235)
Name: NF11964_low_9
Description: NF11964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11964_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39851736 - 39851494
Alignment:
| Q |
1 |
tctagaattctccacaacctaagactgtcgaattcagctcaacgggtttccatttgtttcacaaggtactataactccacacaacattctacaattccac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
39851736 |
tctagaattctccacaacctaagactgtcgaattcagctcaacgggtttccatttgtttcacaaggtactataactccagacatcattctacaattccac |
39851637 |
T |
|
| Q |
101 |
acaaggtactat--------------tttgaacctaatccaaatactttcaatattttgattcatggttattgttctgataataatttctaagaagcttt |
186 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39851636 |
acaaggtactataatgcatcttacattttcaacctaatccaaatactttcaatattttgattcatggttattgttctgataataatttctaagaagcttt |
39851537 |
T |
|
| Q |
187 |
tcggttgattaatcaaaagggtgaatttggttgttgtcctgat |
229 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
39851536 |
tcggttgattaatcaaaagggggaattcggttgttgtcctgat |
39851494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 43172354 - 43172253
Alignment:
| Q |
128 |
aatactttcaatattttgattcatggttattgttctgataataatttctaagaagcttttcggttgattaatcaaaagggtgaatttggttgttgtcctg |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
43172354 |
aatacttttaatattttgattcatggttattgttctgataataataccgaagaagcccttcggttgattaatcaaatgggggaatatggttgttgtcctg |
43172255 |
T |
|
| Q |
228 |
at |
229 |
Q |
| |
|
|| |
|
|
| T |
43172254 |
at |
43172253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University