View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11965_high_1 (Length: 798)

Name: NF11965_high_1
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11965_high_1
NF11965_high_1
[»] chr7 (9 HSPs)
chr7 (368-781)||(43927977-43928390)
chr7 (1-273)||(43928488-43928760)
chr7 (1-274)||(45162001-45162277)
chr7 (1-274)||(29188459-29188734)
chr7 (5-274)||(25599054-25599314)
chr7 (14-229)||(21156741-21156956)
chr7 (23-274)||(3688416-3688662)
chr7 (194-274)||(19067669-19067749)
chr7 (413-531)||(43940139-43940257)
[»] chr6 (2 HSPs)
chr6 (1-272)||(19311035-19311307)
chr6 (195-274)||(19654002-19654081)
[»] chr4 (3 HSPs)
chr4 (1-273)||(24008402-24008677)
chr4 (3-71)||(52107572-52107640)
chr4 (122-274)||(5046017-5046169)
[»] chr2 (4 HSPs)
chr2 (1-228)||(33629192-33629419)
chr2 (1-158)||(23343973-23344130)
chr2 (195-274)||(23343812-23343891)
chr2 (104-186)||(36237753-36237836)
[»] chr8 (7 HSPs)
chr8 (62-271)||(25929236-25929445)
chr8 (1-272)||(42007545-42007814)
chr8 (23-274)||(17725427-17725673)
chr8 (25-220)||(26395171-26395356)
chr8 (104-273)||(28930705-28930874)
chr8 (194-274)||(3418357-3418437)
chr8 (209-251)||(26395493-26395535)
[»] chr1 (5 HSPs)
chr1 (128-245)||(4134668-4134785)
chr1 (94-274)||(4433121-4433301)
chr1 (680-780)||(15608047-15608147)
chr1 (194-274)||(34309170-34309250)
chr1 (195-274)||(23026615-23026694)
[»] chr3 (3 HSPs)
chr3 (94-274)||(13476234-13476414)
chr3 (104-274)||(45081252-45081423)
chr3 (104-186)||(46150580-46150662)
[»] chr5 (1 HSPs)
chr5 (149-235)||(22212873-22212959)


Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 368 - 781
Target Start/End: Complemental strand, 43928390 - 43927977
Alignment:
Q  368 tgatagttgttggagcaggcccttctggtctatcagtagcagcaagcttaagaaaccaatccattccttatataatcctcgaaagagaaaattgttttgc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43928390 tgatagttgttggagcaggcccttctggtctatcagtagcagcaagcttaagaaaccaatccattccttatataatcctcgaaagagaaaattgttttgc 43928291  T
Q  468 ttcactatggaaaaaatattcatacgatcgtcttcatcttcacctcaaaaaacaattttgtgagcttcctcacaaaccatttccaccttcttttccatca 567  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43928290 ttcactatggaaaaaatattcatatgatcgtcttcatcttcacctcaaaaaacaattttgtgagcttcctcacaaaccatttccaccttcttttccatca 43928191  T
Q  568 tacattcctaaagataagtttttaaaatacttagaagactatgtttcacacttcaaaatcaatcctctgtatcacagaacagttgagaatgcagagtatg 667  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43928190 tacattcctaaagataagtttttacaatacttagaggactatgtttcacacttcaaaatcaatcctctgtatcacagaacagttgagaatgcagagtatg 43928091  T
Q  668 atgaaggttctgagaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaaggtttttggttgtagctagtggtgaaac 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43928090 atgaaggttctgagaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaaggtttttggttgtagctagtggtgaaac 43927991  T
Q  768 tagtgacccttttg 781  Q
    ||||||||||||||    
T  43927990 tagtgacccttttg 43927977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 43928760 - 43928488
Alignment:
Q  1 agagggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgt 100  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43928760 agagtgaattgcatttaacaactaatatttccaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgc 43928661  T
Q  101 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgataca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  43928660 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaggataca 43928561  T
Q  201 caataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacg 273  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||| | || ||||||||||||||||    
T  43928560 caataaataaaaatgtggcactattattaacctttgattaaataagatcaatagttgagatttggtgtcaacg 43928488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 45162277 - 45162001
Alignment:
Q  1 agagggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||     
T  45162277 agagggaattgcatttaacaactaatatttccaattcattctaaacaataatatctttgaagtattttaattattcaactatagaatatttcaattttgc 45162178  T
Q  101 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattg---nnnnnnntgat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||           |||    
T  45162177 agacaagagaataaggagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaaggat 45162078  T
Q  198 acacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  45162077 acacaataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttggtgtcaacga 45162001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 29188459 - 29188734
Alignment:
Q  1 agagggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgt 100  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29188459 agaggaaattgcatttaacaactaatatttccaattcattttaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgc 29188558  T
Q  101 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattg--nnnnnnntgata 198  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          ||||    
T  29188559 agacaagagaataaggagaattatgatatgattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaagata 29188658  T
Q  199 cacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| || |||||||||||||||||    
T  29188659 cacaataaataaaaatgtggcactattattaacttttgattaaataagatcaacagttgagatttggtgtcaacga 29188734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 25599314 - 25599054
Alignment:
Q  5 ggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaa-ttttgtaga 103  Q
    |||||||||||||||||||||||||| |||||||||| |||          || |||||||||||||||||||||||||||||||||||| ||||| |||    
T  25599314 ggaattgcatttaacaactaatatttccaattcattcaaaa----------ttggaagtattttaattattcaactatggagtatttcaaattttgcaga 25599225  T
Q  104 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        |||||||||    
T  25599224 caagagaataaggagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaataataatagtgtgtgattgaaaaaaaggatacacaa 25599125  T
Q  204 taaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  25599124 taaataaaaatgtggcactattattaacctttgattaaataagatcaacgattgagatttggtgtcaacga 25599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 21156741 - 21156956
Alignment:
Q  14 tttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaagagaata 113  Q
    |||| |||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||  ||||||| |||| ||||||| | |||| ||||||    
T  21156741 tttaccaactaatgttttcaattcattataagcaataatatcttggaagtattttaattattcagttatggagcattttaattttgaaaacaatagaata 21156840  T
Q  114 aggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaa 213  Q
    |||||  | |||||  ||| |||||| |||||  ||||||||||||||| ||||||||||| |||||||||||        |||||||  ||||||||||    
T  21156841 aggagggtcatgatccgatcatgttttcaatttgggttttgtaatcattgaaaacaataatggtgtgtgattgaaagaaaggatacaccgtaaataaaaa 21156940  T
Q  214 tgtggcattattatta 229  Q
    ||||||| ||| ||||    
T  21156941 tgtggcactataatta 21156956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 3688662 - 3688416
Alignment:
Q  23 taatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaagagaataaggagaatt 122  Q
    |||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| |  |||||||||||| || ||||  |||||||||| ||| || ||     
T  3688662 taatattttcaattaattctaaacgataatatctt-gaagtatctta-ttatttagttatggagtattttaactttg--gacaagagaagaag-aggatc 3688568  T
Q  123 atgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcatt 222  Q
    |||||| |||  |||||||| ||  |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||| || |    
T  3688567 atgatacgatcttgtttccagtttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaaggatacacaataaataaaaacgtgtcact 3688468  T
Q  223 attattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    || |||||||||| || |||||| || ||    |||||||||||||||||||    
T  3688467 ataattaacctttgatcaaataaaataaatggataagatttggtgtcaacga 3688416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 19067749 - 19067669
Alignment:
Q  194 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    ||||||| |||||||| ||||||||||||||||||  ||||| ||||||||| ||||||  || |||||||||||||||||    
T  19067749 tgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgagatttggtgtcaacga 19067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 413 - 531
Target Start/End: Complemental strand, 43940257 - 43940139
Alignment:
Q  413 gcttaagaaaccaatccattccttatataatcctcgaaagagaaaattgttttgcttcactatggaaaaaatattcatacgatcgtcttcatcttcacct 512  Q
    |||||| ||| |||||||| ||||  || || |||||||||||||| ||||||||||| |||||| |||| ||  | || |||||| |||||||||| ||    
T  43940257 gcttaacaaaacaatccatacctttcatcattctcgaaagagaaaactgttttgcttctctatggcaaaattacacctatgatcgtgttcatcttcatct 43940158  T
Q  513 caaaaaacaattttgtgag 531  Q
     | ||||||| ||||||||    
T  43940157 aagaaaacaactttgtgag 43940139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 19311307 - 19311035
Alignment:
Q  1 agagggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgt 100  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19311307 agagggaattgcatttaacaactaatatttccaattctttctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgc 19311208  T
Q  101 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattg-nnnnnnntgatac 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         |||||    
T  19311207 agacaagagaataatgagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaggatac 19311108  T
Q  200 acaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaac 272  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  19311107 acaataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttggtgtcaac 19311035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 19654081 - 19654002
Alignment:
Q  195 gatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    |||||||||||||||||||||||| ||||| |||| ||||| ||||||||| || |||  ||||||||||||||||||||    
T  19654081 gatacacaataaataaaaatgtggtattataattagcctttgattaaataaaataaacggttaagatttggtgtcaacga 19654002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 24008677 - 24008402
Alignment:
Q  1 agagggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgt 100  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  24008677 agagggaattgcatttaacaactaatatttccaattcattttaaacaataatatctttgaagtattttaattattcaactatgcagtatttcaattttgc 24008578  T
Q  101 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattg---nnnnnnntgat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||           |||    
T  24008577 agacaagagaataaggagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaaagat 24008478  T
Q  198 acacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacg 273  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  24008477 acacaataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttggtgtcaacg 24008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 52107572 - 52107640
Alignment:
Q  3 agggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaat 71  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||    
T  52107572 agggaattgcatttaacaactaatatttccaattcgttctaaacaataatattttggaagtattttaat 52107640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 274
Target Start/End: Complemental strand, 5046169 - 5046017
Alignment:
Q  122 tatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcat 221  Q
    ||||||| ||| ||||||||||||   ||||| ||||||||||| ||||||||||||||||||          ||||||||||||| | |||| |||||     
T  5046169 tatgataagatcatgtttccaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcac 5046070  T
Q  222 tattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    ||  |||| ||||| ||||||||| || |||  || |||||||||||||||||    
T  5046069 taaaattagcctttgattaaataaaataaacggttgagatttggtgtcaacga 5046017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 5e-89; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33629192 - 33629419
Alignment:
Q  1 agagggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgt 100  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||     
T  33629192 agagggaatttcatttaacaactaatatttccaattcattctaaacaataatatcttggaagtattttaattattcaactatggggtatttcaattttgc 33629291  T
Q  101 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgataca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        ||||||    
T  33629292 agacaagagaataaggagaattatgataggattatgtttccaatttaggttttgtaatcattaaaaataataatagtgtgtgattgaataaaaggataca 33629391  T
Q  201 caataaataaaaatgtggcattattatt 228  Q
    ||||||||||||||||| || |||||||    
T  33629392 caataaataaaaatgtgacactattatt 33629419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 23344130 - 23343973
Alignment:
Q  1 agagggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgt 100  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||||||||||||     
T  23344130 agaggaaattgcatttaacaactaatatttccaattcattttaaacaataatatctttgaagtattttaattattcaactataaaatatttcaattttgc 23344031  T
Q  101 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaat 158  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23344030 agacaagagaataaagagaattatgataggattatgtttccaatttaggttttgtaat 23343973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 23343891 - 23343812
Alignment:
Q  195 gatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |||||||||    
T  23343891 gatacacaataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttgatgtcaacga 23343812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 36237836 - 36237753
Alignment:
Q  104 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaa-tcattaaaaacaataatagtgtgtgattg 186  Q
    ||||||||| || || || |||||| ||| ||||||||||||  |||||||||| ||||| |||||||||||||||||||||||    
T  36237836 caagagaatgagtaggatcatgatatgatcatgtttccaatttcggttttgtaaatcattgaaaacaataatagtgtgtgattg 36237753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 8e-57; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 62 - 271
Target Start/End: Original strand, 25929236 - 25929445
Alignment:
Q  62 gtattttaattattcaactatggagtatttcaattttgtagacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcat 161  Q
    ||||||||||||||||  |||||||||||| ||||||| |||||| |||||||| |||||||||||| ||| |||||| |||||  ||||||||||||||    
T  25929236 gtattttaattattcagttatggagtattttaattttgcagacaaaagaataagaagaattatgatatgatcatgttttcaatttgggttttgtaatcat 25929335  T
Q  162 taaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagat 261  Q
    |||||||||||||||||||||||||        ||||||||||||||||||| |||| |||||||||||||||| ||||||||| | ||||| || ||||    
T  25929336 taaaaacaataatagtgtgtgattgaaaaaaaagatacacaataaataaaaacgtgggattattattaacctttgattaaataaaaacaacagttgagat 25929435  T
Q  262 ttggtgtcaa 271  Q
    ||||||||||    
T  25929436 ttggtgtcaa 25929445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 42007814 - 42007545
Alignment:
Q  1 agagggaattgcatttaacaactaatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgt 100  Q
    ||||||||||||||||| |||||||||||||  ||||||| |||||||||||||||| |||||||||||||||| ||  |||||||||||| | |||||     
T  42007814 agagggaattgcatttaccaactaatatttttcattcattttaaacaataatatcttggaagtattttaattatccagttatggagtattttatttttgc 42007715  T
Q  101 agacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgataca 200  Q
    | || ||||||||| ||||||||||||| || || |||||||||| | |||||||||||||||||| |||||||| ||||||||||       |||||||    
T  42007714 aaaccagagaataaagagaattatgatacga-taagtttccaatttaagttttgtaatcattaaaatcaataataatgtgtgattg-aaaaaatgataca 42007617  T
Q  201 caataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaac 272  Q
    ||||||||| ||| ||| || || |||||||| || ||||||||| || |||  || |||||||||||||||    
T  42007616 caataaatacaaacgtgacactactattaaccattgattaaataaaattaacggttgagatttggtgtcaac 42007545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 17725427 - 17725673
Alignment:
Q  23 taatattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaagagaataaggagaatt 122  Q
    |||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| |  |||||||||||| || ||||  |||||||||| ||| || ||     
T  17725427 taatattttcaattaattctaaacgataatatctt-gaagtatctta-ttatttatttatggagtattttaactttg--gacaagagaagaag-aggatc 17725521  T
Q  123 atgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcatt 222  Q
    |||||| |||  |||||||| ||  |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||| || |    
T  17725522 atgatacgatcttgtttccagtttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaaggatacacaataaataaaaacgtgtcact 17725621  T
Q  223 attattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    || |||||||||| || |||||| || ||    || ||||||||||||||||    
T  17725622 ataattaacctttgatcaaataaaataaatggataggatttggtgtcaacga 17725673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 26395171 - 26395356
Alignment:
Q  25 atattttcaattcattctaaacaataatatctttgaagtattttaattattcaactatggagtatttcaattttgtagacaagagaataaggagaattat 124  Q
    |||||| |||||||||||||| |||||||||||  |||||||||||||||| |  |||||||||||||||||||| ||||||         |||||||||    
T  26395171 atatttccaattcattctaaaaaataatatcttgcaagtattttaattatttagttatggagtatttcaattttgcagacaa---------gagaattat 26395261  T
Q  125 gataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggca 220  Q
    |||||||| |||||| |||||  |||   ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  26395262 gataggatcatgttttcaatttgggtacggtaatcattaaaaacaataatagtgtgtgatt-aaaaaaaagatacacaataaataaaaatgtggca 26395356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 104 - 273
Target Start/End: Original strand, 28930705 - 28930874
Alignment:
Q  104 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaat-cattaaaaacaataatagtgtgtgattgnnnnnnntgatacaca 202  Q
    ||||||||| || || || |||||| ||| ||||||||||||   |||||||||| ||||||||||||||||||||||||||||        | ||||||    
T  28930705 caagagaatgagtaggatcatgatatgatcatgtttccaatttcagttttgtaattcattaaaaacaataatagtgtgtgattgaaaagaagggtacaca 28930804  T
Q  203 ataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacg 273  Q
    |||||||||||||||||| |||| |||||| || || |||| | ||||||   | ||||||||||||||||    
T  28930805 ataaataaaaatgtggcactatttttaacccttgatcaaatta-atcaacggatgagatttggtgtcaacg 28930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 3418357 - 3418437
Alignment:
Q  194 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    ||||||| |||||||| ||||||||||||||||||  ||||| ||||||||| ||||||  || |  ||||||||||||||    
T  3418357 tgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgaagtttggtgtcaacga 3418437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 26395493 - 26395535
Alignment:
Q  209 aaaaatgtggcattattattaacctttcattaaataagatcaa 251  Q
    |||||||||||| |||||||||||||| ||||||||| |||||    
T  26395493 aaaaatgtggcactattattaacctttgattaaataaaatcaa 26395535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 4134668 - 4134785
Alignment:
Q  128 aggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcattattat 227  Q
    ||||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||| ||    
T  4134668 aggataatgtttctaatttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaatgatacacaataaataaaaatgtggcactataat 4134767  T
Q  228 taacctttcattaaataa 245  Q
    |||||||| ||| |||||    
T  4134768 taacctttgatttaataa 4134785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 4433301 - 4433121
Alignment:
Q  94 attttgtagacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnn 193  Q
    |||||| |||||| |||||||||||||| | |||| ||| || |||||||||   |||||||||||||| |||||||||||||||||||||||           
T  4433301 attttgcagacaaaagaataaggagaatcaagatacgatcatctttccaatttgagttttgtaatcatttaaaacaataatagtgtgtgattgaaagaaa 4433202  T
Q  194 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
     ||| |||||||||||||||||||||| |||  ||||||||| || |||| | ||||||   | |||||||||||||||||    
T  4433201 ggatgcacaataaataaaaatgtggcactatatttaacctttgatcaaattaaatcaacggatgagatttggtgtcaacga 4433121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 680 - 780
Target Start/End: Original strand, 15608047 - 15608147
Alignment:
Q  680 agaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaaggtttttggttgtagctagtggtgaaactagtgacccttt 779  Q
    |||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||  | |||||||| ||||||||||| |||||    
T  15608047 agaaatggaaagtgaaggctatgaataaggattctggtgaagttgaggaatatgatggaaggtttttggtaatggctagtggcgaaactagtgaaccttt 15608146  T
Q  780 t 780  Q
    |    
T  15608147 t 15608147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 34309170 - 34309250
Alignment:
Q  194 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    ||||||| |||||||| ||||||||||||||||||  ||||| ||||||||| ||||||  || |||||||||||||||||    
T  34309170 tgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgagatttggtgtcaacga 34309250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 23026694 - 23026615
Alignment:
Q  195 gatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    ||||||||||||||| ||| |||||| ||| ||||| |||| ||||||||| || || | || ||||||| |||||||||    
T  23026694 gatacacaataaatataaacgtggcactataattaatctttgattaaataaaataaatagttgagatttgatgtcaacga 23026615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 13476414 - 13476234
Alignment:
Q  94 attttgtagacaagagaataaggagaattatgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnn 193  Q
    |||||| |||||| |||||||||||||| | |||| ||| || |||||||||   |||||||||||||| ||||||||||||||||||| |||           
T  13476414 attttgcagacaaaagaataaggagaatcaagatacgatcatctttccaatttgagttttgtaatcatttaaaacaataatagtgtgtggttgaaagaaa 13476315  T
Q  194 tgatacacaataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
     |||||||||||||||||||||||||| |||  ||||||||| || |||| | ||||||   | |||||||||||||||||    
T  13476314 ggatacacaataaataaaaatgtggcactatatttaacctttgatcaaattaaatcaacggatgagatttggtgtcaacga 13476234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 274
Target Start/End: Original strand, 45081252 - 45081423
Alignment:
Q  104 caagagaataaggagaattatgataggattatgtttccaattgaggttttgtaa-tcattaaaaacaataatagtgtgtgattgnnnnnnntgatacaca 202  Q
    ||||||||| || || || |||||| ||| ||||||||||||  |||||||||| ||||| |||||||||||| ||||||||||        | ||||||    
T  45081252 caagagaatgagtaggatcatgatatgatcatgtttccaatttcggttttgtaaatcattgaaaacaataataatgtgtgattgaaaagaagggtacaca 45081351  T
Q  203 ataaataaaaatgtggcattattattaacctttcattaaataagatcaacaattaagatttggtgtcaacga 274  Q
    ||||| |||||||||||  |||  ||| ||||| || |||||| || ||   || |||||||||||||||||    
T  45081352 ataaaaaaaaatgtggctctatatttagcctttgatcaaataaaataaatggttgagatttggtgtcaacga 45081423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 46150580 - 46150662
Alignment:
Q  104 caagagaataaggagaattatgataggattatgtttccaattgaggttttgt-aatcattaaaaacaataatagtgtgtgattg 186  Q
    ||||||||| || || || |||||| ||| ||||||||||||  |||||||| |||||||  ||||||||||||||||||||||    
T  46150580 caagagaatgagtaggatcatgatatgatcatgtttccaatttcggttttgtaaatcatt-gaaacaataatagtgtgtgattg 46150662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 22212873 - 22212959
Alignment:
Q  149 gttttgtaatcattaaaaacaataatagtgtgtgattgnnnnnnntgatacacaataaataaaaatgtggcattattattaaccttt 235  Q
    |||||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||||||| ||||||||||    
T  22212873 gttttgtaatcattaaaaacaataatcgtgtgtaattgaaagaaatgatacacaataaataaaaatgtggcattataattaaccttt 22212959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University