View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_high_15 (Length: 243)
Name: NF11965_high_15
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 3348717 - 3348498
Alignment:
| Q |
11 |
gcagagaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaattcgaaattacttaactatctatggtgtctagtattt |
110 |
Q |
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| T |
3348717 |
gcagagaatagggacgaagaggaggatgggaatagaatgacaaaattgtccttatattttaaatccgaaattacttaactgcccatggtgtctagtattt |
3348618 |
T |
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| Q |
111 |
gtccaaaaaattgtgtttatttatcatttctgatgaattaaattcgatatcaaaatagttttagtnnnnnnnnnnntatttaatttaatttgtatacatc |
210 |
Q |
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| T |
3348617 |
gtccaaaaagttgtgtttatttatcatttctgatgaattaaattcgatatcaaaatagttttagtaaaaaaaaaa--attcaatttaatttgtatacatc |
3348520 |
T |
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| Q |
211 |
ttaaattctttatttgtgatgt |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
3348519 |
ttaaattctttatttgtgatgt |
3348498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 39071562 - 39071433
Alignment:
| Q |
11 |
gcagagaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaattcgaaattacttaactatctatggtgtctagtattt |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
39071562 |
gcagaaaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaatccgaaattacttaactgcccatggtgtctagtattt |
39071463 |
T |
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| Q |
111 |
gtccaaaaaattgtgtttatttatcatttc |
140 |
Q |
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| T |
39071462 |
gtccaaaaagttgtgtttatttatcatttc |
39071433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 6143133 - 6143000
Alignment:
| Q |
11 |
gcagagaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaattcgaaattacttaactatctatggtgtctagtattt |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
6143133 |
gcagaaaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaatccgaaattacttaactgcccatggtgtctagtattt |
6143034 |
T |
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| Q |
111 |
gtccaaaaaattgtgtttatttatcatttctgat |
144 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
6143033 |
gtccaaaaagttgtgtttatttatcatttctgat |
6143000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 11304025 - 11303896
Alignment:
| Q |
13 |
agagaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaattcgaaa-ttacttaactatctatggtgtctagtatttg |
111 |
Q |
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|||||| | |||||| ||||||||||||| | ||||||||||| ||||| | | ||||||| || ||| |||||||| | | ||||| ||||||||||| |
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| T |
11304025 |
agagaacaaggaagaggaggaggatggga-tggaatgacaaaactgtccctatcttttaaaatctaaaattacttaattgcccatggtatctagtatttg |
11303927 |
T |
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| Q |
112 |
tccaaaaaattgtgtttatttatcatttctg |
142 |
Q |
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|||||||| |||||||| |||||||||||| |
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| T |
11303926 |
tccaaaaagctgtgtttacttatcatttctg |
11303896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 39444108 - 39444032
Alignment:
| Q |
11 |
gcagagaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaattcgaaattactta |
87 |
Q |
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|||||||||| ||||| |||||||||||||||| |||||||| |||||||| | | ||||||| || |||||||||| |
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| T |
39444108 |
gcagagaatatggaaggagaggaggatgggaatggaatgacacaattgtccctatgttttaaagtcaaaattactta |
39444032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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