View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11965_high_2 (Length: 656)

Name: NF11965_high_2
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11965_high_2
NF11965_high_2
[»] chr3 (5 HSPs)
chr3 (23-160)||(10366467-10366603)
chr3 (210-334)||(10366322-10366448)
chr3 (32-161)||(37083881-37084013)
chr3 (34-93)||(1720149-1720208)
chr3 (39-71)||(11042010-11042042)
[»] chr5 (4 HSPs)
chr5 (33-106)||(16869914-16869987)
chr5 (56-160)||(17259523-17259628)
chr5 (33-97)||(28363469-28363533)
chr5 (33-94)||(1621530-1621591)
[»] chr2 (3 HSPs)
chr2 (35-136)||(39184820-39184922)
chr2 (33-93)||(15804440-15804500)
chr2 (248-300)||(40116384-40116436)
[»] chr8 (2 HSPs)
chr8 (33-96)||(35764627-35764692)
chr8 (34-73)||(29512819-29512858)
[»] chr4 (6 HSPs)
chr4 (32-73)||(31736143-31736184)
chr4 (28-73)||(20988815-20988861)
chr4 (33-70)||(24474137-24474174)
chr4 (33-73)||(24418240-24418280)
chr4 (37-73)||(41758556-41758592)
chr4 (33-73)||(52831490-52831530)


Alignment Details
Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 10366603 - 10366467
Alignment:
Q  23 gggagtagcat-tttttataagctaattcaagtggtttatagcttatcatttatcatttcaatattacccttgtagcattaattggaaaatctatatatt 121  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366603 gggagtagcatctttttataagctaattcaagtggtttatagcttatcatttatcatttcaatattacccttgtagcattaattggaaaatctatatatt 10366504  T
Q  122 aattaaatatgtcttttttatgtcattccatgcttataa 160  Q
    || |||  |||||||| |||||||||||| ||| |||||    
T  10366503 aaataa--atgtctttcttatgtcattccttgcatataa 10366467  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 210 - 334
Target Start/End: Complemental strand, 10366448 - 10366322
Alignment:
Q  210 cttatctgctatcagttatccattataagtttat---aagttcatccgctataaactaacttatccgttattcactactttttattaaacagaaacaaag 306  Q
    |||||||||||| |||||| ||||||| |||| |   |||||||||| |||||| |||||||||| ||||||||||| |||||| |||| ||||||| |     
T  10366448 cttatctgctat-agttattcattataggtttgttgtaagttcatccactataagctaacttatcggttattcactattttttactaaatagaaacagat 10366350  T
Q  307 ccttagtcttggcccgaccaataacata 334  Q
     ||||||||| |||| ||||||||||||    
T  10366349 tcttagtctttgccccaccaataacata 10366322  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 37083881 - 37084013
Alignment:
Q  32 attttttataagctaattcaagtggtttatagcttatcat-ttatcatttcaatattacccttgtagcattaattggaaaat--ctatatattaattaaa 128  Q
    |||||| |||||||||||||||| | |||||||||||||| || | ||  |||| ||||||||||||| ||||||| |||||   || | ||||||||||    
T  37083881 atttttaataagctaattcaagtagcttatagcttatcatatttttatcacaattttacccttgtagccttaattgaaaaataattaaacattaattaaa 37083980  T
Q  129 tatgtcttttttatgtcattccatgcttataaa 161  Q
    ||| |||| ||||||||||| ||| ||||||||    
T  37083981 tatatcttatttatgtcatttcatacttataaa 37084013  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 1720149 - 1720208
Alignment:
Q  34 tttttataagctaattcaagtggtttatagcttatcatttatcatttcaatattaccctt 93  Q
    ||||||||||||||||||||| ||||||| |||||||||  | || || |||||||||||    
T  1720149 tttttataagctaattcaagtagtttataacttatcattatttatctcgatattaccctt 1720208  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 11042010 - 11042042
Alignment:
Q  39 ataagctaattcaagtggtttatagcttatcat 71  Q
    |||||||||||||||| ||||||||||||||||    
T  11042010 ataagctaattcaagtagtttatagcttatcat 11042042  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 16869987 - 16869914
Alignment:
Q  33 ttttttataagctaattcaagtggtttatagcttatcatttatcatttcaatattacccttgtagcattaattg 106  Q
    ||||| |||||||||||||||| | |||||||||||||||| | |||||||| ||||||||||| | |||||||    
T  16869987 tttttgataagctaattcaagtagcttatagcttatcattttttatttcaattttacccttgtaactttaattg 16869914  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 17259523 - 17259628
Alignment:
Q  56 gtttatagcttatcatttatcatttcaatattacccttgtagcattaattggaaaatctata-tattaattaaatatgtcttttttatgtcattccatgc 154  Q
    ||||||| |||||||||| |||| ||||  |||| |||||||| ||||||| ||||  |  | |||||||||||||| |||||||||||||||| ||| |    
T  17259523 gtttataacttatcatttttcatctcaaatttacacttgtagccttaattgaaaaaaattaagtattaattaaatatatcttttttatgtcatttcatac 17259622  T
Q  155 ttataa 160  Q
    ||||||    
T  17259623 ttataa 17259628  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 28363469 - 28363533
Alignment:
Q  33 ttttttataagctaattcaagtggtttatagcttatcatttatcatttcaatattacccttgtag 97  Q
    ||||||||||||||| |||||| | |||||||||||||||| | || ||||| |||| |||||||    
T  28363469 ttttttataagctaactcaagtagcttatagcttatcattttttatctcaattttactcttgtag 28363533  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 1621591 - 1621530
Alignment:
Q  33 ttttttataagctaattcaagtggtttatagcttatcatttatcatttcaatattacccttg 94  Q
    ||||| |||||||||||||||| | ||||||||||||| || | || ||||| |||||||||    
T  1621591 tttttgataagctaattcaagtagcttatagcttatcagtttttatctcaattttacccttg 1621530  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 39184922 - 39184820
Alignment:
Q  35 ttttataagctaattcaagtggtttatagcttatcatttatcatt-tcaatattacccttgtagcattaattggaaaatctatatattaattaaatatgt 133  Q
    |||| ||| ||||||||| | | ||||| |||||||||| ||||| ||||| ||| ||||||||| ||||||| ||||  || ||||||||||||||| |    
T  39184922 ttttctaacctaattcaactagcttataacttatcatttttcattctcaattttaaccttgtagctttaattgaaaaaattaaatattaattaaatatat 39184823  T
Q  134 ctt 136  Q
    |||    
T  39184822 ctt 39184820  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 15804440 - 15804500
Alignment:
Q  33 ttttttataagctaattcaagtggtttatagcttatcatttatcatttcaatattaccctt 93  Q
    ||||| |||||||||||||||| | |||||||||||||||  | || ||||| ||||||||    
T  15804440 tttttgataagctaattcaagtagcttatagcttatcattatttatctcaattttaccctt 15804500  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 40116384 - 40116436
Alignment:
Q  248 tcatccgctataaactaacttatccgttattcactactttttattaaacagaa 300  Q
    ||||| |||||||||||||||||| || |||||||| ||||||  ||||||||    
T  40116384 tcatctgctataaactaacttatcagtcattcactattttttaccaaacagaa 40116436  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 35764627 - 35764692
Alignment:
Q  33 ttttttataagctaattcaagt-ggtt-tatagcttatcatttatcatttcaatattacccttgta 96  Q
    |||||||||||||||||||||| |||| ||||||||||||||  | |||||||| |||||||||||    
T  35764627 ttttttataagctaattcaagtaggttatatagcttatcattatttatttcaattttacccttgta 35764692  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 29512819 - 29512858
Alignment:
Q  34 tttttataagctaattcaagtggtttatagcttatcattt 73  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  29512819 tttttataagctaattcaagtagattatagcttatcattt 29512858  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 31736184 - 31736143
Alignment:
Q  32 attttttataagctaattcaagtggtttatagcttatcattt 73  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  31736184 attttttataagctaattcaagtagtttatagcttataattt 31736143  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 20988861 - 20988815
Alignment:
Q  28 tagcatttttt-ataagctaattcaagtggtttatagcttatcattt 73  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||||    
T  20988861 tagcattttttgataagctaattcaagtagcttatagcttatcattt 20988815  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 24474137 - 24474174
Alignment:
Q  33 ttttttataagctaattcaagtggtttatagcttatca 70  Q
    |||||||||||||||||||||| | |||||||||||||    
T  24474137 ttttttataagctaattcaagtagcttatagcttatca 24474174  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 24418280 - 24418240
Alignment:
Q  33 ttttttataagctaattcaagtggtttatagcttatcattt 73  Q
    ||||| |||||||||||||||| | ||||||||||||||||    
T  24418280 tttttgataagctaattcaagtagcttatagcttatcattt 24418240  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 41758556 - 41758592
Alignment:
Q  37 ttataagctaattcaagtggtttatagcttatcattt 73  Q
    |||||||||||||||||| | ||||||||||||||||    
T  41758556 ttataagctaattcaagtagcttatagcttatcattt 41758592  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 52831490 - 52831530
Alignment:
Q  33 ttttttataagctaattcaagtggtttatagcttatcattt 73  Q
    ||||| |||||||||||||||| | ||||||||||||||||    
T  52831490 tttttgataagctaattcaagtagcttatagcttatcattt 52831530  T

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