View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_high_4 (Length: 548)
Name: NF11965_high_4
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 17782589 - 17782897
Alignment:
| Q |
19 |
aaagaccttagtcgttaaaataattgttagaacgccaattttaagtaactttctaatatttagggaggtaaaataggttgagcccataaagtttaaccta |
118 |
Q |
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| T |
17782589 |
aaagaccttagtcgttaaaataattgttagaacaccaaatttaagtaactttctaatattttgggaggtaaaataggttgagcccagaaagtttaaccta |
17782688 |
T |
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| Q |
119 |
ttacttaagtatgacggattaaggtccgcacctacgactcaaatccgtctggctcattaaaacggagcggatttactcgttttgtcacatttaaacctat |
218 |
Q |
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| T |
17782689 |
ttacttaagtatgatggattaaggtccgcacctacgactcaaatccgtctggctcattaaaacggagcggatttactcgttttgtcacatttaaacctat |
17782788 |
T |
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| Q |
219 |
gttttaagttttaaccactcaaactgtcggcttgtttgatatataacgtacgtttattttgacaatgtttagatcattcctagtagctaccgcatattcc |
318 |
Q |
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| T |
17782789 |
gttttaagttttaaccactcaaactgtcggcttgtttgatacataacgtacgtttattttgaaaatgtttagatcattcctagtagctaccgcatattcc |
17782888 |
T |
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| Q |
319 |
aatcacggg |
327 |
Q |
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| T |
17782889 |
aatcacggg |
17782897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 367 - 547
Target Start/End: Original strand, 17782937 - 17783117
Alignment:
| Q |
367 |
tacttgtggtgtttgaagaaggggtcaaggaaggttttaatgagcaattccacttcttcaatggcgaaacactaggactcctcgacattgtggtagctgc |
466 |
Q |
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| T |
17782937 |
tacttgtggtgtttgaagaaggggtcaaggaaggttttaatgagaaattccacttcttcaacggcgaaacactaggactcctcgacattgtggtagctgc |
17783036 |
T |
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| Q |
467 |
gacttcttgcacctacgaagcatttcaggagtcctgtgagatagaggtcttcacacccgaaaagatgccgaaatttttcat |
547 |
Q |
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| T |
17783037 |
gacttcttgcacctacgaagcatttcaggaggcctgtgagatagaggtcttcacacccgaaaagatgccgaaatttttcat |
17783117 |
T |
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