View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11965_high_5 (Length: 463)

Name: NF11965_high_5
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11965_high_5
NF11965_high_5
[»] chr4 (17 HSPs)
chr4 (260-448)||(27487187-27487367)
chr4 (314-448)||(27480102-27480236)
chr4 (314-436)||(27505508-27505629)
chr4 (263-440)||(27525874-27526043)
chr4 (309-418)||(27523201-27523312)
chr4 (377-448)||(27502003-27502074)
chr4 (263-375)||(27513507-27513618)
chr4 (312-443)||(27474085-27474214)
chr4 (318-448)||(27460679-27460802)
chr4 (324-372)||(27476930-27476977)
chr4 (319-448)||(27469661-27469783)
chr4 (273-385)||(27500116-27500228)
chr4 (374-450)||(27513642-27513717)
chr4 (189-245)||(27523093-27523149)
chr4 (415-448)||(27476888-27476921)
chr4 (324-406)||(27467061-27467142)
chr4 (28-89)||(27522915-27522976)
[»] chr5 (1 HSPs)
chr5 (28-88)||(1753815-1753875)
[»] chr7 (1 HSPs)
chr7 (347-376)||(21476448-21476477)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 260 - 448
Target Start/End: Complemental strand, 27487367 - 27487187
Alignment:
Q  260 tagatgctttgaatttcagatttatatttaaggcaaaatataaagaaaaacagtaataatgttgataaatttctcattgagatgaacatttttacaacca 359  Q
    |||||||||||| || |||||||||||||| ||  ||||||| ||||||       ||||||| ||||||||||||||||||||||||||||||||||||    
T  27487367 tagatgctttgatttacagatttatatttatggagaaatatagagaaaa-------taatgttaataaatttctcattgagatgaacatttttacaacca 27487275  T
Q  360 agtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgagtaaaatatctacgtcagtcctatg 448  Q
    ||||||||||||| ||||||  || ||||||||||||||| ||  |||||||||||||||||| || | ||||||||||||||||||||    
T  27487274 agtatgataacaacaaaagattaaatcttttgaaggtgag-aataaaactgctacaaaaaatgggtcagatatctacgtcagtcctatg 27487187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 314 - 448
Target Start/End: Complemental strand, 27480236 - 27480102
Alignment:
Q  314 aataatgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgcta 413  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || | ||||||| ||||||||||||||| |||    
T  27480236 aataatgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatattttgaacgtgagaaactaaactacta 27480137  T
Q  414 caaaaaatgagtaaaatatctacgtcagtcctatg 448  Q
    |||||||||  | ||||| ||||||||||||||||    
T  27480136 caaaaaatggatcaaataactacgtcagtcctatg 27480102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 314 - 436
Target Start/End: Original strand, 27505508 - 27505629
Alignment:
Q  314 aataatgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgcta 413  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || ||||||||| |||||||||||||||||||    
T  27505508 aatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatcttttgaatgtgagaaactaaactgcta 27505607  T
Q  414 caaaaaatgagtaaaatatctac 436  Q
    | ||||||| || ||||||||||    
T  27505608 c-aaaaatgggtcaaatatctac 27505629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 440
Target Start/End: Original strand, 27525874 - 27526043
Alignment:
Q  263 atgctttgaatttcagatttatatttaaggcaaaatataaagaaaaacagtaataatgttgataaatttctcattgagatgaacatttttacaaccaagt 362  Q
    ||||||||| |||||||||||||||||||| |||||||| |||     |||||| ||||| ||||||||||||||||| ||||| |||| | || |||||    
T  27525874 atgctttgattttcagatttatatttaagggaaaatatagaga-----agtaatgatgtt-ataaatttctcattgaggtgaactttttcataaacaagt 27525967  T
Q  363 atgataacaataaaagagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgagtaaaatatctacgtca 440  Q
    || ||||||| |||||| ||| |||| | ||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  27525968 atcataacaacaaaagataaa-tcttctaaaggtgagaaactaaactgctac-aaaaatgggtcaaatatctacgtca 27526043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 418
Target Start/End: Original strand, 27523201 - 27523312
Alignment:
Q  309 acagtaataatgt--tgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaa 406  Q
    |||||||||||||  | ||||| ||||||||||| ||||||| ||||||| ||| ||||||||||| |||||| ||| ||||||||||||||||||||||    
T  27523201 acagtaataatgtgttaataaacttctcattgaggtgaacatatttacaagcaaatatgataacaacaaaagataaaatcttttgaaggtgagaaactaa 27523300  T
Q  407 actgctacaaaa 418  Q
    ||||||||||||    
T  27523301 actgctacaaaa 27523312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 377 - 448
Target Start/End: Original strand, 27502003 - 27502074
Alignment:
Q  377 agagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgagtaaaatatctacgtcagtcctatg 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27502003 agagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgtgtcaaatatctacgtcagtcctatg 27502074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 27513507 - 27513618
Alignment:
Q  263 atgctttgaatttcagatttatatttaaggcaaaatataaagaaaaacagtaataatgttgataaatttctcattgagatgaacatttttacaaccaagt 362  Q
    ||||||||| |||||||||||||||||| |  ||||| | || || ||| |||||||||| |||||||| |||||||||||||| |||||||||||||||    
T  27513507 atgctttgattttcagatttatatttaatgggaaatacacagtaacacaataataatgttaataaatttgtcattgagatgaac-tttttacaaccaagt 27513605  T
Q  363 atgataacaataa 375  Q
    |||||||||||||    
T  27513606 atgataacaataa 27513618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 443
Target Start/End: Complemental strand, 27474214 - 27474085
Alignment:
Q  312 gtaataatgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgc 411  Q
    |||||| |||| | |||||||||||| |||||||| |||| ||| |||||||||||||||| ||||| |||| |||||||||||| |||||||||| |||    
T  27474214 gtaatagtgttcaaaaatttctcattcagatgaacgtttt-acatccaagtatgataacaacaaaagtgaaaatcttttgaaggttagaaactaaagtgc 27474116  T
Q  412 tacaaaaaatgagtaaaatatctacgtcagtc 443  Q
    |||||||| || || ||||||||| |||||||    
T  27474115 tacaaaaattg-gtcaaatatctatgtcagtc 27474085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 448
Target Start/End: Complemental strand, 27460802 - 27460679
Alignment:
Q  318 atgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgctacaaa 417  Q
    ||||| ||||||||||||||||||||||||||||||||||    ||||||||||| ||||||  || |||| ||||||  |||||||||||||||||  |    
T  27460802 atgttaataaatttctcattgagatgaacatttttacaac----tatgataacaacaaaagattaa-tcttctgaaggatagaaactaaactgctac--a 27460710  T
Q  418 aaatgagtaaaatatctacgtcagtcctatg 448  Q
    ||||| || ||||| ||||||||||||||||    
T  27460709 aaatgggtcaaataactacgtcagtcctatg 27460679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 27476977 - 27476930
Alignment:
Q  324 ataaatttctcattgagatgaacatttttacaaccaagtatgataacaa 372  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27476977 ataaatttctcattgagatgaacatttttacaa-caagtatgataacaa 27476930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 448
Target Start/End: Complemental strand, 27469783 - 27469661
Alignment:
Q  319 tgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgctacaaaa 418  Q
    |||| |||||||||||||| |||| |||||||| ||| ||||     || |||| ||||| |||| ||||||||||||  ||||||||| ||||||| ||    
T  27469783 tgttaataaatttctcatttagatcaacatttt-acatccaa-----attacaacaaaagtgaaaatcttttgaaggtatgaaactaaagtgctaca-aa 27469691  T
Q  419 aatgagtaaaatatctacgtcagtcctatg 448  Q
    |||| || | ||||||||||||||||||||    
T  27469690 aatgggtcagatatctacgtcagtcctatg 27469661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 385
Target Start/End: Original strand, 27500116 - 27500228
Alignment:
Q  273 tttcagatttatatttaaggcaaa-atataaagaaaaacagtaataatgttgataaatttctcattgagatgaacatttttacaaccaagtatgataaca 371  Q
    ||||| ||| |||||||||| ||| ||||| ||||| || |||||| |||| |||||||||||||| |||||||  ||| |||| ||||||||||| ||     
T  27500116 tttcatattgatatttaagggaaagatatagagaaatacggtaatagtgttaataaatttctcattcagatgaa-gtttatacatccaagtatgatcact 27500214  T
Q  372 ataaaagagaaact 385  Q
    | ||||||||||||    
T  27500215 acaaaagagaaact 27500228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 27513642 - 27513717
Alignment:
Q  374 aaaagagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgagtaaaatatctacgtcagtcctatgct 450  Q
    ||||||||||||||||| |||||||||||||| ||| |||| |||| || || |||||||||||||| | |||||||    
T  27513642 aaaagagaaactcttttcaaggtgagaaactatactactac-aaaattgggtcaaatatctacgtcaatactatgct 27513717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 27523093 - 27523149
Alignment:
Q  189 attttataattgaaaaactgaatcttcaattatatcgtccagagattctaagctgaa 245  Q
    |||||||||||||| |||||||||||| |||||||| || ||||||||||| |||||    
T  27523093 attttataattgaacaactgaatcttccattatatcctctagagattctaaactgaa 27523149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 448
Target Start/End: Complemental strand, 27476921 - 27476888
Alignment:
Q  415 aaaaaatgagtaaaatatctacgtcagtcctatg 448  Q
    ||||||||||||||||||||||||||||||||||    
T  27476921 aaaaaatgagtaaaatatctacgtcagtcctatg 27476888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 27467142 - 27467061
Alignment:
Q  324 ataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaa 406  Q
    ||||||||||||||  ||||||  |||| ||| |||||||||||||||| ||||| | || || ||||||||| |||||||||    
T  27467142 ataaatttctcattccgatgaatgtttt-acatccaagtatgataacaacaaaagtggaaatcgtttgaaggttagaaactaa 27467061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 27522915 - 27522976
Alignment:
Q  28 ttgataaattaaggaattgttattacgtttgaagaaaccatgtttttgttatctaaattcta 89  Q
    ||||||||||||  |||||||| || | ||  |||||||||||||||| |||||||||||||    
T  27522915 ttgataaattaaataattgttaatatgatttgagaaaccatgtttttgctatctaaattcta 27522976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 1753875 - 1753815
Alignment:
Q  28 ttgataaattaaggaattgttattacgtttgaagaaaccatgtttttgttatctaaattct 88  Q
    |||||||||||| |||||||| ||| | |||||||||||||||||||| ||||||||||||    
T  1753875 ttgataaattaaagaattgtttttatgattgaagaaaccatgtttttgctatctaaattct 1753815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 376
Target Start/End: Complemental strand, 21476477 - 21476448
Alignment:
Q  347 atttttacaaccaagtatgataacaataaa 376  Q
    ||||||||||||||||||||||||||||||    
T  21476477 atttttacaaccaagtatgataacaataaa 21476448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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