View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11965_high_6 (Length: 407)

Name: NF11965_high_6
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11965_high_6
NF11965_high_6
[»] chr8 (3 HSPs)
chr8 (1-342)||(30039433-30039776)
chr8 (272-331)||(2968486-2968545)
chr8 (272-342)||(7281603-7281673)
[»] chr2 (2 HSPs)
chr2 (272-332)||(17767655-17767715)
chr2 (298-332)||(11798620-11798654)
[»] chr6 (1 HSPs)
chr6 (293-323)||(29927492-29927522)
[»] chr1 (2 HSPs)
chr1 (293-342)||(20411551-20411601)
chr1 (239-332)||(9298517-9298610)
[»] chr3 (1 HSPs)
chr3 (295-342)||(53402610-53402658)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 30039776 - 30039433
Alignment:
Q  1 tgtcatcattaattaattttgcttgcttagtgaccaatagaaaagaaatcttgcaacttgttcatcgttcctttccattgatgttgctaagtcatgtgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30039776 tgtcatcattaattaattttgcttgcttagtgaccaatagaaaagaaatcttgcaacttgttcatcgttcctttccattgatgttgctaagtcatgtgta 30039677  T
Q  101 aattatacccaataataaatgatagggtagcatttatatatttattgcatgcacatttaatagagaaatgataggtgtacacgggatccatgcatgtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30039676 aattatacccaataataaatgatagggtagcatttatatacctattgcatgcacatttaatagagaaatgataggtgtacatgggatccatgcatgtgta 30039577  T
Q  201 aaactttttaa--cnnnnnnnnnnaaagaagctaaactctcttctcttcttctcaaaccccaaccgtcattattttctttttcttgtctaatgaagatga 298  Q
    ||| |||||||             ||||||||||| ||||||||||| ||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  30039576 aaattttttaagttttttttttttaaagaagctaacctctcttctctccttttcaaaccccaaccgtcattcctttctttttcttgtctaatgaagatga 30039477  T
Q  299 gtgatttatggtcaattttgacccacaatcacccatcagaattg 342  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||    
T  30039476 gtgatttatggtcaattttgacccaaaatcactcatccgaattg 30039433  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 2968486 - 2968545
Alignment:
Q  272 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacc 331  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||    
T  2968486 tttctttttcttgtctattgaagatgagtgatttatggtcaattttgactcaaaatcacc 2968545  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 7281603 - 7281673
Alignment:
Q  272 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcagaattg 342  Q
    |||||| |||||||||| ||||||||| ||||||| |||||||| | ||| | ||||||||||| ||||||    
T  7281603 tttcttcttcttgtctattgaagatgaatgatttagggtcaattctaacctaaaatcacccatccgaattg 7281673  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 17767715 - 17767655
Alignment:
Q  272 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcaccc 332  Q
    |||||| ||||||||||  ||||||| ||||||||  ||||||||||||||| ||||||||    
T  17767715 tttcttcttcttgtctaccgaagatgggtgatttagagtcaattttgacccagaatcaccc 17767655  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 11798654 - 11798620
Alignment:
Q  298 agtgatttatggtcaattttgacccacaatcaccc 332  Q
    |||||||||||||||||||||||||| ||||||||    
T  11798654 agtgatttatggtcaattttgacccaaaatcaccc 11798620  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 323
Target Start/End: Complemental strand, 29927522 - 29927492
Alignment:
Q  293 agatgagtgatttatggtcaattttgaccca 323  Q
    |||||||||||||||||||||||||||||||    
T  29927522 agatgagtgatttatggtcaattttgaccca 29927492  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 20411551 - 20411601
Alignment:
Q  293 agatgagtgatttatggtcaattttgaccc-acaatcacccatcagaattg 342  Q
    ||||| |||||||||||||||||||||||| | ||||||||||| ||||||    
T  20411551 agatgggtgatttatggtcaattttgacccaaaaatcacccatccgaattg 20411601  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 9298610 - 9298517
Alignment:
Q  239 cttctcttcttctcaaaccccaaccgtcattattttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcaccc 332  Q
    |||||||||||||||||||  ||| |||     |||||| |||||||||| |||||| | |||||||| |||||||||||| ||| | ||||||    
T  9298610 cttctcttcttctcaaaccttaactgtcggccatttcttcttcttgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc 9298517  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 53402610 - 53402658
Alignment:
Q  295 atgagtgatttatggtcaattttgaccc-acaatcacccatcagaattg 342  Q
    |||||||||||| ||||||||||||||| | ||||||||||| ||||||    
T  53402610 atgagtgatttaaggtcaattttgacccaaaaatcacccatccgaattg 53402658  T

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