View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_low_11 (Length: 348)
Name: NF11965_low_11
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 18150130 - 18150224
Alignment:
| Q |
214 |
cacaaataatgttatatgagggtttgaattttggagccaaaaccataagggaagctcaaatgaagcttaattatttatttgtttttaaaccgaaa |
308 |
Q |
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| T |
18150130 |
cacaaaaaatgttatatgaagttttgaactttggagccaaaaccataagggaagctcaaatgaagcttaattatttatttgtttttaaaccgaaa |
18150224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 19336337 - 19336427
Alignment:
| Q |
214 |
cacaaataatgttatatgagggtttgaattttggagccaaaaccataagggaagctcaaatgaagcttaattatttatttgtttttaaacc |
304 |
Q |
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| T |
19336337 |
cacaaaaaatgttatatgaggtttggaattttgaagccaaaagcaaaagggaagctcaagtgaaacttaattatttatttgtttttaaacc |
19336427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 336
Target Start/End: Original strand, 19426929 - 19427051
Alignment:
| Q |
214 |
cacaaataatgttatatgagggtttgaattttggagccaaaaccataagggaagctcaaatgaagcttaattatttatttgtttttaaaccgaaaggata |
313 |
Q |
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| T |
19426929 |
cacaaaaaatgttacatgaggtttgaaattttgaagccaaaatcaaaagggaagctcaaatggaagttaattatttatttgtttttaaaccgaacagaaa |
19427028 |
T |
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| Q |
314 |
ggaatggaagacgcataggccac |
336 |
Q |
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| T |
19427029 |
ggaatcaaagacgcataggccac |
19427051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 19463849 - 19463899
Alignment:
| Q |
23 |
tcaaatgaaacttatattatttattggtttttaaactgaaaggaagaggca |
73 |
Q |
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| T |
19463849 |
tcaagtgaaacttatattatttatttgtttttaaattgaaaggaagaggca |
19463899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 18150173 - 18150224
Alignment:
| Q |
11 |
cataggggaagctcaaatgaaacttatattatttattggtttttaaactgaaa |
63 |
Q |
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| T |
18150173 |
cataagggaagctcaaatgaagctta-attatttatttgtttttaaaccgaaa |
18150224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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