View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_low_14 (Length: 265)
Name: NF11965_low_14
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 47271037 - 47271235
Alignment:
| Q |
52 |
cagagaattatgttccaaaccttctattgccagagaagagagtggctctcccagatggagaaaacatgatgagaccgacatcaacatcgcatagaacaga |
151 |
Q |
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| T |
47271037 |
cagagaattatgttccaaaccttctattgccagagaagagagtggctctcccagatggagaaaacatgatgagaccgacatcaacatcgcatagaacaga |
47271136 |
T |
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| Q |
152 |
aagttcataagctttcttgattaaaccattccttctctttgagaaagtaacctgtctatttgttatgttctcaatctttttgatctgaagcttaactct |
250 |
Q |
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| T |
47271137 |
aagttcataagctttcttgattaaaccattccttctctttgagaaagtaacctgtctatttgttatgttctcaatctttttgatctgaagcttaactct |
47271235 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 12811979 - 12812040
Alignment:
| Q |
144 |
agaacagaaagttcataagctttcttgattaaaccattccttctctttgagaaagtaacctg |
205 |
Q |
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| T |
12811979 |
agaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctg |
12812040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 30642907 - 30642961
Alignment:
| Q |
145 |
gaacagaaagttcataagctttcttgattaaaccattccttctctttgagaaagt |
199 |
Q |
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| T |
30642907 |
gaacagacagttcataagcttttttgagcaaaccatttcttctctttgagaaagt |
30642961 |
T |
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