View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_low_18 (Length: 239)
Name: NF11965_low_18
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_18 |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 34293315 - 34293101
Alignment:
| Q |
17 |
agatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagct |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34293315 |
agatggatcacttaggcttgtacaaaacccaacaaagagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatatatagct |
34293216 |
T |
|
| Q |
117 |
ttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttcagttaattttccttgtaaaaaggcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34293215 |
ttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaaggcat |
34293116 |
T |
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| Q |
217 |
tattgatgtccatct |
231 |
Q |
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|||||| ||||||| |
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| T |
34293115 |
tattgacatccatct |
34293101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 24486569 - 24486783
Alignment:
| Q |
17 |
agatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24486569 |
agatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatatatagct |
24486668 |
T |
|
| Q |
117 |
ttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttcagttaattttccttgtaaaaaggcat |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24486669 |
ttcttaagcttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaaggcat |
24486768 |
T |
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| Q |
217 |
tattgatgtccatct |
231 |
Q |
| |
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|||||| ||||||| |
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| T |
24486769 |
tattgacatccatct |
24486783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 24494903 - 24495117
Alignment:
| Q |
17 |
agatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagct |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24494903 |
agatggatcacttaggcttgtacaaaacccaacatagagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatatatagct |
24495002 |
T |
|
| Q |
117 |
ttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttcagttaattttccttgtaaaaaggcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24495003 |
ttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaaggcat |
24495102 |
T |
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| Q |
217 |
tattgatgtccatct |
231 |
Q |
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|||||| ||||||| |
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| T |
24495103 |
tattgacatccatct |
24495117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 59037 - 59182
Alignment:
| Q |
72 |
gaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggtt |
171 |
Q |
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||||||||||| || ||||||| || | ||||||||| || |||||||| || || |||| ||| || |||| |||||| || || || ||||| || | |
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| T |
59037 |
gaatcatgccatgcacgaggtgcctgccacaaaccataaattgctttcttgagcttacaaatatgatgaggaaattcagaatggataaaacctgggggct |
59136 |
T |
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| Q |
172 |
gctgcatgtagacattttcagttaattttccttgtaaaaaggcatt |
217 |
Q |
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||||||| || |||| ||||| |||||||||||| || |||||||| |
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| T |
59137 |
gctgcatatacacatcttcagataattttccttgcaagaaggcatt |
59182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 81833 - 81949
Alignment:
| Q |
74 |
atcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgc |
173 |
Q |
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||||||||| || ||||| || || || || ||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| |
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| T |
81833 |
atcatgccatgctcgaggagtctgccttaatccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgt |
81932 |
T |
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| Q |
174 |
tgcatgtagacattttc |
190 |
Q |
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| |||| | |||||||| |
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| T |
81933 |
tccatgaaaacattttc |
81949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 32323656 - 32323741
Alignment:
| Q |
105 |
ccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttc |
190 |
Q |
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||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| | |||| | |||||||| |
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| T |
32323656 |
ccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgttccatgaaaacattttc |
32323741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 18728692 - 18728777
Alignment:
| Q |
105 |
ccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttc |
190 |
Q |
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||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| | |||| | |||||||| |
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| T |
18728692 |
ccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgttccatgaaaacattttc |
18728777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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