View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_low_21 (Length: 219)
Name: NF11965_low_21
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 7551294 - 7551107
Alignment:
| Q |
18 |
catttcaaataatgccaacttatgctataaactatctctgcacgctcaatagcaaatacatctcctggtatctcctttgcaaccatttggtgaaaataat |
117 |
Q |
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| T |
7551294 |
catttcaaataatgccaacttatgctataaactatctctgcacgctcaatagcaaatacatctcctggtatctcctttgcaaccatttggtgaaaataat |
7551195 |
T |
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| Q |
118 |
ctagaggaattgatgaaaacgtgtggcagaatgagtttcttccaaacagaagtgatatgctacttagaagaatttcccgtgcttcatc |
205 |
Q |
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| T |
7551194 |
ctagaggaattgatgaaaacgtgtggcagaatgagtttcttccaaacagaagtgatatgctacttagaagaatttcccgtgcttcatc |
7551107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 1134385 - 1134198
Alignment:
| Q |
18 |
catttcaaataatgccaacttatgctataaactatctctgcacgctcaatagcaaatacatctcctggtatctcctttgcaaccatttggtgaaaataat |
117 |
Q |
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||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| |
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| T |
1134385 |
catttcaaagaatgccaacatatgctataaactatctcagcacgctcaatagcaaatacatctcccggtatctcctttgcaaccaattggtgaaaagaat |
1134286 |
T |
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| Q |
118 |
ctagaggaattgatgaaaacgtgtggcagaatgagtttcttccaaacagaagtgatatgctacttagaagaatttcccgtgcttcatc |
205 |
Q |
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||| ||||||||||||||| ||||||||||||| |||||| |||||||||| || ||||| ||||||||||||| | |||||||||| |
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| T |
1134285 |
ctacaggaattgatgaaaaagtgtggcagaatgggtttctgccaaacagaaacgacatgcttcttagaagaattttctgtgcttcatc |
1134198 |
T |
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