View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11965_low_23 (Length: 204)
Name: NF11965_low_23
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_23 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 49350238 - 49350062
Alignment:
| Q |
15 |
atgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgannnnnnnggcagagacatctataaatatatatgaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49350238 |
atgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgatttttttggcagagacatctataaatatatatgaag |
49350139 |
T |
|
| Q |
115 |
agcttgttaaggaaggtat-----taattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctct |
186 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350138 |
agcttgttaaggaaggtattaatataattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctct |
49350062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 250545 - 250376
Alignment:
| Q |
15 |
atgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaattt-gagctgannnnnnnggcagagacatctataaatatatatgaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
250545 |
atgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaattttgagctgatttttttggcagagacatctataaatatatatgaa |
250446 |
T |
|
| Q |
114 |
gagcttgttaaggaaggtattaattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctct |
186 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250445 |
gagcttgttaaggaaggtattaattaa---gaagtgtatcaataaacatacagtatactgagaatgatcctct |
250376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University