View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_low_3 (Length: 595)
Name: NF11965_low_3
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 9429017 - 9428433
Alignment:
| Q |
1 |
ctttaaacataatttcacctatggtttttccatcatatggaacactcttcattgtatttggatctttcacatcaacttcaaccatcataaagtctataac |
100 |
Q |
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| T |
9429017 |
ctttaaacataatttcacctatggtttttccatcatatggaacactcttcattgtatttggatctttcacatcaacttcaaccatcataaagtctataac |
9428918 |
T |
|
| Q |
101 |
cccttttttatcaacataattcagctttgtaatatcatcatcaaaattttgtttccactttcttacaataactggacctaatgtttcagtcataccataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9428917 |
cccttttttatcaacataattcagctttgtaatatcatcatcaaaattttgtttccactttcttacaataactggacctaatgtttcagtcataccataa |
9428818 |
T |
|
| Q |
201 |
ccaatattaacatcaaatccaagctctgccactttgttaagaattttgaatgatggtaatataccagcaactgtgacactcaccttatgagaaaaaggcc |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9428817 |
ccaatattaacatcaaatcctagctctgccactttgttaagaattttgaatgatggtaatataccagcaactgtgacactcaccttatgagaaaaaggcc |
9428718 |
T |
|
| Q |
301 |
taataatttcacaatttgcaataatttccagaagggtaggtgcaccacacaaatgtgttaccttatgaacatgaattgcatcaataatatcttttgctga |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9428717 |
taataatttcacaatttgcaataatttccagaagggtaggtgcaccacacaaatgggttaccttatgaacatgaattgcatcaataatatcttttgctga |
9428618 |
T |
|
| Q |
401 |
aaaattatttctaagacaaatgtttgtaccaccaagagcaggcattaaccaaatgaaacaccatccattgcatctaaacatgtcaactgtccataaaaac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9428617 |
aaaattatttctaagacaaatgtttgtaccaccaagagcaggcattaaccaaatgaaacaccatccattgcatctaaacatgtcaactgtccataaaaac |
9428518 |
T |
|
| Q |
501 |
accggcataggattcacgtcgaaacgagtaatagttgcgagtgaattaaggtagacacttctatgactataaactgctccctttg |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9428517 |
accggcataggattcacgtcgaaacgagtaatagttgcgagtgaattaaggtagacacttctatgactataaactgctccttttg |
9428433 |
T |
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