View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_low_7 (Length: 400)
Name: NF11965_low_7
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 42049553 - 42049187
Alignment:
| Q |
20 |
tggtgctatacctgcagaccatcattcacttgatcataaccatccctccccataattacattgtaaaaagtgtgccccctctactgtgttttgaaaccta |
119 |
Q |
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| T |
42049553 |
tggtgctatacctgcagaccatcattcacttgatcataaccatccctccccataattacattgtaaaaagtgtgccccctctactgtgttttgaaaccta |
42049454 |
T |
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| Q |
120 |
gtttagttctactcctttaaggaaatatgaattaatgtttcataaggtaaagttatgggtatatatgtgaaaaaataatttcaaacattctctcttcctt |
219 |
Q |
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| T |
42049453 |
gtttagttctactcctttaaggaaatatgaattaatgtttcataaggtaaagttatgggtatatatgtgaaaaaataacttcaaacattctctcttcctt |
42049354 |
T |
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| Q |
220 |
aatgtttgaaaataatcatctccttaaaaaaatgttggaaaataatcatgtgannnnnnnnnnnnnnaaaatgaaaaaataataatgtgattaattgcaa |
319 |
Q |
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| T |
42049353 |
aatgtttgaaaataatcatctccttaaaaaaatgttggaaaataatcatgtgattttttttttt----aaatgaaaaaataataatgtgattaattgcaa |
42049258 |
T |
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| Q |
320 |
aagttcttaacacaattattgattaatgttctccttccttttcttttgttataagcaaatgttctcctttg |
390 |
Q |
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| T |
42049257 |
aagttcttaacacaattattgattaatgttctccttccttttcttttgttataagcaaatgttctcctttg |
42049187 |
T |
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