View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11965_low_8 (Length: 389)
Name: NF11965_low_8
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_8 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 46229949 - 46230300
Alignment:
| Q |
1 |
gcacactatggagtaattttccattgacttgaatagaaaagcagctaacaacatcaagtccatatctcatcagttgttccagaaatttagaaagtggggc |
100 |
Q |
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| T |
46229949 |
gcacactatggagtaattttccattgacttgaatagaaaagcagctaacaacatcaagtccatatctcatcagttgttccagaaatttagaaagtggggc |
46230048 |
T |
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| Q |
101 |
accttcctctataaagccagttttagtactgatttcaattcccacagttctattattcttgtggatagtgaaactacaagaaacatggcttttattttta |
200 |
Q |
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| T |
46230049 |
accttcctctataaagccagttttagtactgatttcaattcccacagttctattattcttgtggatagtgaaactacaagaaacatggcttttattttta |
46230148 |
T |
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| Q |
201 |
agactaggattagagagttttttcagttcatcccttttgtaacttagttctttcatattcttcttcaagtgatttatgtaattcactgcttcattcattt |
300 |
Q |
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| T |
46230149 |
agactaggattagagagttttttcagttcatcccttttgtaacttagttctttcatattcttcttcaagtgatttatgtaattcactgcctcattcattt |
46230248 |
T |
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| Q |
301 |
gatcagataaagaacgttttccctgttagagaaacaataaataaccctaaag |
352 |
Q |
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| T |
46230249 |
gatcagataaagaacgttttccctgttagagaaacaataaataaccctaaag |
46230300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 220125 - 220012
Alignment:
| Q |
213 |
gagagttttttcagttcatcccttttgtaacttagttctttcatattcttcttcaagtgatttatgtaattcactgcttcattcatttgatcagataaag |
312 |
Q |
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| T |
220125 |
gagagttttttgagttcatctctcttggtaccaagttcattgatattattttgcatgtgttttatgtaattcactgcctcgttcatatgatcagatattg |
220026 |
T |
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| Q |
313 |
aacgttttccctgt |
326 |
Q |
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| T |
220025 |
atcgctttccctgt |
220012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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