View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11965_low_9 (Length: 384)
Name: NF11965_low_9
Description: NF11965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11965_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 63421 - 63198
Alignment:
| Q |
19 |
ttggtccataccattgtccataagttctgactcaactgataaaaatgttgaaattgctaaattgaataccgtaattggggtttgaatctaggtttattca |
118 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||| |||||||||||||| || |
|
|
| T |
63421 |
ttggtccataccactatccataagttctgactcaactgataaaaatgttgaaattgctagattagataccataattggagttcgaatctaggtttatcca |
63322 |
T |
|
| Q |
119 |
cttgtgtgtgtgagtttcaatggttgtttaccatttcgtctatgcaccaatttttgttctttattaaacgccatatttactttt----tgcattttcaca |
214 |
Q |
| |
|
|| | ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
63321 |
ct--tatgtatgagtttcaatggttgtttaccatttcgtctatgcaccaatttgtgttcttcattaaacgccatatttacttcttgaatgcattttcaca |
63224 |
T |
|
| Q |
215 |
tcaagttttgactacttgtgattaat |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
63223 |
tcaagttttgactacttgtgattaat |
63198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 63186 - 63130
Alignment:
| Q |
289 |
tatgtgatgaatagcacaccattcaatattgtttgaagatcttctttatagtttatc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
63186 |
tatgtgatgaatagcacaccattcaatattgtttgaagatcttctttatggtttatc |
63130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University