View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11966_high_15 (Length: 215)
Name: NF11966_high_15
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11966_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 22782687 - 22782506
Alignment:
| Q |
15 |
cacagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag |
114 |
Q |
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| T |
22782687 |
cacagagcagtgacaaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag |
22782588 |
T |
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| Q |
115 |
atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaa |
196 |
Q |
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| T |
22782587 |
atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaa |
22782506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 22765364 - 22765183
Alignment:
| Q |
15 |
cacagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag |
114 |
Q |
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||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
22765364 |
cacagagcagtaacaaataagaacaaaagaaggacttcccatgcatcatttttgatccctcgagatgatgttgaaattgagccatttgatcatatgatag |
22765265 |
T |
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| Q |
115 |
atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaa |
196 |
Q |
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| T |
22765264 |
atgctgaaaacaccaaaatttaccagaaagtcaagtttggagattatttaaggcaatccatgaagagaaaaatggagggaaa |
22765183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 22778553 - 22778382
Alignment:
| Q |
25 |
tgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaaca |
124 |
Q |
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| T |
22778553 |
tgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatcatatgatagatgctcaaaa |
22778454 |
T |
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| Q |
125 |
tcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaa |
196 |
Q |
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| T |
22778453 |
ccccaagatgtaccagaaagtcaagtatggagattatttgaggcattccttaaagagaaaaatggagcgaaa |
22778382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 22775184 - 22775003
Alignment:
| Q |
15 |
cacagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag |
114 |
Q |
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| T |
22775184 |
cacagagcaatgacaaataaaaacaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatgttgaagtggagccctttgatcatatgatag |
22775085 |
T |
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| Q |
115 |
atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaa |
196 |
Q |
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| T |
22775084 |
atgctcaaaaccctaagatgtaccagaaagtgttgtatggagattatttgaggcaatccatgaagagaaaaatggagggaaa |
22775003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 23278382 - 23278567
Alignment:
| Q |
11 |
ggagcacagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatg |
110 |
Q |
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| T |
23278382 |
ggagcatagagctatgacaaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgctgaacttgggccctttgatcatatg |
23278481 |
T |
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| Q |
111 |
atagatgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaa |
196 |
Q |
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| T |
23278482 |
atagatgatcaaaatcccaagatgtacaaggaaatcacttatggagagtatttgaggcacaccttgaataggaaattggaaggaaa |
23278567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 16085070 - 16085210
Alignment:
| Q |
27 |
acaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatc |
126 |
Q |
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|||||||||||||||| ||||| ||| ||||| ||||| |||| |||| ||| ||||||||||||||||| ||| | ||||||||| ||||| || | | |
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| T |
16085070 |
acaaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgagaagatgttgaagttgagccctttgaccatatgataaatgctgaaaacc |
16085169 |
T |
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| Q |
127 |
ccaagatgtaccagaaagtcaagtttggagattatttgagg |
167 |
Q |
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| T |
16085170 |
ccaaaatgtaccagaaagtcaggtatggagattatttgagg |
16085210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 22770382 - 22770263
Alignment:
| Q |
18 |
agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg |
117 |
Q |
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|||||| | |||||||||||||||| ||||||| || | ||||| |||||| ||||| | ||||| |||| | | | |||| ||||||||||||||| |
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| T |
22770382 |
agagcaatcacaaataagaacaagaaaaggactacttttatatcatatttgttccctcagggtgatgctgaaatcggggcattagatcatatgatagatg |
22770283 |
T |
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| Q |
118 |
ctcaacatcccaagatgtac |
137 |
Q |
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|||| |||||||||||||| |
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| T |
22770282 |
atcaaaatcccaagatgtac |
22770263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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