View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11966_high_7 (Length: 364)
Name: NF11966_high_7
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11966_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 54 - 357
Target Start/End: Original strand, 37419951 - 37420254
Alignment:
| Q |
54 |
ggtatttcggttagggtgagaaaatgccctagtcacggctgagaaccgtagaattaagaagtctcactagattctaagatgcaacatgtccacacttcgc |
153 |
Q |
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| T |
37419951 |
ggtatttcggttagggtgagaaaatgccctagtcacggctgagaaccgtagaattaagaagtctcgctagattctaagatgcaacatgtccacacttcgc |
37420050 |
T |
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| Q |
154 |
actagattttactcgctcatatacttctcgttttcgagtgaatatgcaaatcagttcgtgaatttgtaagcatcggtcaaaatgcccatgtaagattggg |
253 |
Q |
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| T |
37420051 |
actagattttactcgctcatatacttctcgttttcgagtgaatatgcaaatcagttcgtgaatttgtaagcatcggtcaaaatgcccatgtaagattggg |
37420150 |
T |
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| Q |
254 |
catttaagattgatccttcatgctgcatatcaatgcatggaataacaaaacgctatctttctggtcaaaaagctgatgcagcaagatttgtcctcccttt |
353 |
Q |
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| T |
37420151 |
catttaagattgatccttcatgctgcatatcaatgcatggaataacagaacactatctttctggtcaaaaagctgatgcagcaagatttgtcctcctttt |
37420250 |
T |
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| Q |
354 |
gctt |
357 |
Q |
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|||| |
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| T |
37420251 |
gctt |
37420254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 52147674 - 52147563
Alignment:
| Q |
246 |
agattgggcatttaagattgatccttcatgctgcatatcaatgcatggaataacaaaacgctatctttctggtcaaaaagctgatgcagcaagatttgtc |
345 |
Q |
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| T |
52147674 |
agattgggcatgtaagattgatcctttatgctgcatatcaatgcatggaataacagaacgctatctttctggtcaaaaagctgatgcagcaagatttgtc |
52147575 |
T |
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| Q |
346 |
ctccctttgctt |
357 |
Q |
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| T |
52147574 |
cgccttttgctt |
52147563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 53060738 - 53060881
Alignment:
| Q |
102 |
tagaattaagaagtctcactagattctaagatgcaacatgtccacacttcgcactagattttactc--------gctcatatacttctcgttttcgagtg |
193 |
Q |
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| T |
53060738 |
tagaattaagaagtctcactagattctaagatgcaatatgt-------tcgcactagattttgctcagtcacttgctcacatacttctcgtttttgagtg |
53060830 |
T |
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| Q |
194 |
aatatgcaaatcagttcgtgaatttgtaagcatcggtcaaaatgcccatgt |
244 |
Q |
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| T |
53060831 |
aatatgcttattagttcttgaaattgtaagcatctgtcaaaatgcccatgt |
53060881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 53983924 - 53983880
Alignment:
| Q |
93 |
tgagaaccgtagaattaagaagtctcactagattctaagatgcaa |
137 |
Q |
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| T |
53983924 |
tgagaaccatagaaataagaagtctcactagattctaagatgcaa |
53983880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 6547330 - 6547233
Alignment:
| Q |
247 |
gattgggcatttaagattgatccttcatgctgcatatcaatgcatggaataacaaaacgctatctttctggtcaaaaagctgatgcagcaagatttgt |
344 |
Q |
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|||||||||| ||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| |
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| T |
6547330 |
gattgggcatacaagattgatcctttacgctgcatatcaatgcatggaataacagaacgatatctttctggtcagaaagctgatgcagcaggatttgt |
6547233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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