View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11966_low_1 (Length: 571)
Name: NF11966_low_1
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11966_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 18988213 - 18988763
Alignment:
| Q |
17 |
aattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgttaatcatcttatcatgaccacacttacgaaggtgaaactcgtcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
18988213 |
aattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgttaatcatcttatcacgaccacacttacgaaggtgaaactcgtcg |
18988312 |
T |
|
| Q |
117 |
tgaagaaacactattttgttagataatgtcttggttgctggattccataaatatagaaaaatctcttcataattagagttggtaacgtaaccgtacaagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18988313 |
tgaagaaacactattttgttagataatgtcttggttgctgggttccataaatatagaaaaatctcttcataattagagttggtaacgtaaccgtacaagc |
18988412 |
T |
|
| Q |
217 |
agagcagtccattgcaggaaccaactacttcgaggcgtctgtctagggggaagccaggttcttccaagaaagggctgtcgaggaagcaaggttcatgaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
18988413 |
agagcagtccattgcaggaaccaactacttcgaggcgtctgtatagggggaagtcaggttcttggaagaaagggctgtcgaggaagcaaggttgatgaaa |
18988512 |
T |
|
| Q |
317 |
gtaagggttatcggcgagggtgatggaggtgttttggatcaagcgatg--------------ccatcttaacatcatcataaattaatgtaaggtgtgtg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
18988513 |
gtaagggttatcggcgagggtgatggaggtgttttggatcaagcgatgcaaggggaaacataccatcttaacatcatcataaattaatgtaaggtgtgtg |
18988612 |
T |
|
| Q |
403 |
tttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttca |
502 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18988613 |
tttcttgcagatcgcttaaggtggagtttgatgaaagtagggtcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttca |
18988712 |
T |
|
| Q |
503 |
cgtcaaggaatgataggatttcttcgataaggtcattgtaaaggactccag |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18988713 |
cgtcaaggaatgataggatttcttcgataaggtcattgtagaggactccag |
18988763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 18953364 - 18953914
Alignment:
| Q |
17 |
aattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgttaatcatcttatcatgaccacacttacgaaggtgaaactcgtcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
18953364 |
aattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgactgtgtgtttatcatctcataacgaccacacttacgaaggtgaaactcgtcg |
18953463 |
T |
|
| Q |
117 |
tgaagaaacactattttgttagataatgtcttggttgctggattccataaatatagaaaaatctcttcataattagagttggtaacgtaaccgtacaagc |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18953464 |
tgaagaaacaatattttgttagataatgtcttggttgctgggttccataaatatagaaaaatctcttcataattagagttggtaacgtaaccgtgcaagc |
18953563 |
T |
|
| Q |
217 |
agagcagtccattgcaggaaccaactacttcgaggcgtctgtctagggggaagccaggttcttccaagaaagggctgtcgaggaagcaaggttcatgaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18953564 |
agagcagtccattgcaggaaccaactacttcgaggcgtctgtctagggggaagccaggttcttccaagaaagggctgtcgaggaagcaaggttcatgaaa |
18953663 |
T |
|
| Q |
317 |
gtaagggttatcggcgagggtgatggaggtgttttggatcaagcgatg--------------ccatcttaacatcatcataaattaatgtaaggtgtgtg |
402 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18953664 |
gtaagggttatgggcgagggtgatggaggtgttttggatcaagcgatgcaaggggaaacataccatcttaacatcatcataaattaatgtaaggtgtgtg |
18953763 |
T |
|
| Q |
403 |
tttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttca |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18953764 |
tttcttgcagatcgattaaggtggagtttgacgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttca |
18953863 |
T |
|
| Q |
503 |
cgtcaaggaatgataggatttcttcgataaggtcattgtaaaggactccag |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18953864 |
cgtcaaggaatgataggatttcttcgataaggtcattgtagaggactccag |
18953914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 18983411 - 18983961
Alignment:
| Q |
17 |
aattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgttaatcatcttatcatgaccacacttacgaaggtgaaactcgtcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18983411 |
aattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgtttatcatcttatcacgaccacacttacgaaggtgaaactcgtcg |
18983510 |
T |
|
| Q |
117 |
tgaagaaacactattttgttagataatgtcttggttgctggattccataaatatagaaaaatctcttcataattagagttggtaacgtaaccgtacaagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18983511 |
tgaagaaacactattttgttagataatgtcttggttgctgggttccataaatatagaaaaatctcttcataattagagttggtaacgtaaccatacaagc |
18983610 |
T |
|
| Q |
217 |
agagcagtccattgcaggaaccaactacttcgaggcgtctgtctagggggaagccaggttcttccaagaaagggctgtcgaggaagcaaggttcatgaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18983611 |
agagcagtccattgcaggaaccaactacttcgaggcgtctgtatagggggaagtcaggttcttggaagaaagggctgtcgaggaagcaaggttcatgaaa |
18983710 |
T |
|
| Q |
317 |
gtaagggttatcggcgagggtgatggaggtgttttggatcaagcgatg--------------ccatcttaacatcatcataaattaatgtaaggtgtgtg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18983711 |
gtaagggttatcggcgagggtgatggaggtgttttggatcaagcgatgcaaggggaaacataccatcttaacatcatcataaattaatgtaaggtgtgtg |
18983810 |
T |
|
| Q |
403 |
tttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttca |
502 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18983811 |
tttcttgcagatcgcttaaggtggagtttgatgaaagtagggtcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttca |
18983910 |
T |
|
| Q |
503 |
cgtcaaggaatgataggatttcttcgataaggtcattgtaaaggactccag |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18983911 |
cgtcaaggaatgataggatttcttcgataaggtcattgtagaggactccag |
18983961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 18998057 - 18998597
Alignment:
| Q |
17 |
aattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgttaatcatcttatcatgaccacacttacgaaggtgaaactcgtcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18998057 |
aattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgtttatcatcttatcacgaccacacttacgaaggtgaaactcgtcg |
18998156 |
T |
|
| Q |
117 |
tgaagaaacactattttgttagataatgtcttggttgctggattccataaatatagaaaaatctcttcataattagagttggtaacgtaaccgtacaagc |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18998157 |
tgaagaaacactattttgttagatagtgtcttggttgctgggttccataaatatagaaaaatctcttcataattagagttggtaacgtaaccctacaagc |
18998256 |
T |
|
| Q |
217 |
agagcagtccattgcaggaaccaactacttcgaggcgtctgtctagggggaagccaggttcttccaagaaagggctgtcgaggaagcaaggttcatgaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
18998257 |
agagcagtccattgcaggaaccaactacttcgaggcgtctgtatagggggaagtcaggttcttggaagaaagggctgtcgaggaagcaaggttgatgaaa |
18998356 |
T |
|
| Q |
317 |
gtaagggttatcggcgagggtgatggaggtgttttggatcaagcgatg--------------ccatcttaacatcatcataaattaatgtaaggtgtgtg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18998357 |
gtaagggttatcggcgagggtgatggaggtgttttggatcaagcgatgcaaggggaaacataccatcttaacatcatcataaattaatgtaaggtgtgtg |
18998456 |
T |
|
| Q |
403 |
tttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttca |
502 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18998457 |
tttcttgc----------aggtggagtttgatgaaagtagggtcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttca |
18998546 |
T |
|
| Q |
503 |
cgtcaaggaatgataggatttcttcgataaggtcattgtaaaggactccag |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18998547 |
cgtcaaggaatgataggatttcttcgataaggtcattgtagaggactccag |
18998597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 396 - 538
Target Start/End: Original strand, 19598530 - 19598672
Alignment:
| Q |
396 |
gtgtgtgtttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaaga |
495 |
Q |
| |
|
|||| |||||||||||||| | || ||||| ||||||| ||||| |||| ||| || || || |||||||||||| ||||||| |||||| || |||| |
|
|
| T |
19598530 |
gtgtttgtttcttgcagattgcttgaggtgtagtttgacaaaagtgggatgagagattagggttttccatgacttgcagacgcatttgaattgcacaaga |
19598629 |
T |
|
| Q |
496 |
gacttcacgtcaaggaatgataggatttcttcgataaggtcat |
538 |
Q |
| |
|
|| || || |||||||||||||||||| ||||||| |||| |
|
|
| T |
19598630 |
gaatttacaggaaggaatgataggatttcaacgataagttcat |
19598672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 19598266 - 19598318
Alignment:
| Q |
113 |
gtcgtgaagaaacactattttgttagataatgtcttggttgctggattccata |
165 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| | |||||||||| ||||||| |
|
|
| T |
19598266 |
gtcgtgaaaaaacactattgtgttagataatgacctggttgctgggttccata |
19598318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 503
Target Start/End: Original strand, 19610198 - 19610266
Alignment:
| Q |
435 |
gaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttcac |
503 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||||||| |||||||||| |||||| | ||||| ||||| |
|
|
| T |
19610198 |
gaaagtgggatcggatatgagagctttccatgacttgcagacgcacttaaatcgcatcagagatttcac |
19610266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 19605015 - 19605085
Alignment:
| Q |
119 |
aagaaacactattttgttagataatgtcttggttgctggattccataaatatagaaaaatctcttcataat |
189 |
Q |
| |
|
||||||||||||||| | ||| ||| || | |||||||| ||||||| ||| | ||||||||||||||||| |
|
|
| T |
19605015 |
aagaaacactattttttcagaaaatatcctcgttgctgggttccatatatagaaaaaaatctcttcataat |
19605085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 36339365 - 36339294
Alignment:
| Q |
418 |
ttaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgc |
489 |
Q |
| |
|
|||||||| | |||||||||||| ||||| || |||||||| |||||||||||| || |||||||||||| |
|
|
| T |
36339365 |
ttaaggtgcattttgatgaaagttggatctgagatgagagtgttccatgacttgctcacacacttgaatcgc |
36339294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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