View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11966_low_16 (Length: 228)
Name: NF11966_low_16
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11966_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 36209923 - 36209719
Alignment:
| Q |
11 |
agcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatagatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209923 |
agcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatagatg |
36209824 |
T |
|
| Q |
111 |
aactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttcttgcagtaatttcct |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209823 |
aactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttcttgcagtaatttcct |
36209724 |
T |
|
| Q |
211 |
ctgtg |
215 |
Q |
| |
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||||| |
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|
| T |
36209723 |
ctgtg |
36209719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 36188482 - 36188278
Alignment:
| Q |
11 |
agcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttt-gcagttatagat |
109 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |
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| T |
36188482 |
agcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagat |
36188383 |
T |
|
| Q |
110 |
gaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttcttgcagtaatttcc |
209 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36188382 |
gaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttccctt-tttcttgcagtaatttcc |
36188284 |
T |
|
| Q |
210 |
tctgtg |
215 |
Q |
| |
|
|||||| |
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|
| T |
36188283 |
tctgtg |
36188278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 36196800 - 36196595
Alignment:
| Q |
11 |
agcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttt-gcagttatagat |
109 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |
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| T |
36196800 |
agcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagat |
36196701 |
T |
|
| Q |
110 |
gaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttcttgcagtaatttcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36196700 |
gaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttcccctgtttcttgcagtaatttcg |
36196601 |
T |
|
| Q |
210 |
tctgtg |
215 |
Q |
| |
|
|||||| |
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|
| T |
36196600 |
tctgtg |
36196595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 36207830 - 36207688
Alignment:
| Q |
8 |
agaagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatag |
107 |
Q |
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|
||||| |||| |||||||||| ||||||| ||||||||||||| | | |||||||||||||||||||||||||||||| | | ||| |||| ||| || |
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| T |
36207830 |
agaagtagagttgatgaaaatttgaagtccaaacatgcacatcatatcgaaaacaccatgttggagagattagaggttcacatgtgatttgttgttgtat |
36207731 |
T |
|
| Q |
108 |
atgaactaagattttg-tattctgtcaaatgcttgtgtttgta |
149 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||| ||||| |
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| T |
36207730 |
atgaactaagattttgtttttctgttaaatgcttgtgcttgta |
36207688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 36184646 - 36184500
Alignment:
| Q |
8 |
agaagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagatt----agaggttgagaagtgctttgcagtt |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| | ||| | |||| ||||||||||||||||||| ||||||| | |||||||||| ||| |
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|
| T |
36184646 |
agaagcagagttgatgaaaatctgaagtccaaacatgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtgctttgttgtt |
36184547 |
T |
|
| Q |
104 |
atagatgaactaagattttg-tattctgtcaaatgcttgtgtttgta |
149 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||||| ||||| |
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|
| T |
36184546 |
gtagatgaactaagattttgtttttctgttaaatgcttgtgcttgta |
36184500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 36214833 - 36214722
Alignment:
| Q |
12 |
gcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatagatga |
111 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||| | |||||||||||| ||||||| |||||||||| |||| |||||||||| | ||||||| | |
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| T |
36214833 |
gcagagatggtgaaaatttgaagtccaaacatgcactttatttggaaaacacaatgttggggagattagagattgacaagtgctttgttggtatagatca |
36214734 |
T |
|
| Q |
112 |
actaagattttg |
123 |
Q |
| |
|
| ||||| |||| |
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| T |
36214733 |
attaagactttg |
36214722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 36198960 - 36198878
Alignment:
| Q |
30 |
tgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatagatgaa |
112 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||| || |||||||||| |
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|
| T |
36198960 |
tgaagtctaaacatgcacatcctttggaaaacacaatgttggagagattagagattggtaagtgctttttaggtatagatgaa |
36198878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 36202358 - 36202310
Alignment:
| Q |
9 |
gaagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttgga |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
36202358 |
gaagcagagatgatgaaaatctgaagtcgaaacatgaacatagtttgga |
36202310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 36200972 - 36200857
Alignment:
| Q |
9 |
gaagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttataga |
108 |
Q |
| |
|
||||||||| ||| ||||| || ||| ||||||||||||| | |||||| ||||||||||||| |||||| |||||| | ||||| || | | |||| |
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|
| T |
36200972 |
gaagcagagttgacgaaaacttgtagttcaaacatgcacatcatatggaaagcaccatgttggagtgattagtggttgacaggtgctgtgttggtgtaga |
36200873 |
T |
|
| Q |
109 |
tgaactaagattttgt |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36200872 |
tgaactaagattttgt |
36200857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 36184376 - 36184340
Alignment:
| Q |
173 |
tatggtaagatttcccttgtttcttgcagtaatttcc |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36184376 |
tatggtaagatttcacttgtttcttgcagtaatttcc |
36184340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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