View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11966_low_2 (Length: 564)
Name: NF11966_low_2
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11966_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 37 - 548
Target Start/End: Original strand, 24481020 - 24481530
Alignment:
| Q |
37 |
aatagtttgctgcacttaccaaatatttcataaaaaataatccttaagagaatctgccgtacaatcctatcaagtgagaatagagacagaaatgtcaata |
136 |
Q |
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| T |
24481020 |
aatagtttgttgcacttaccaaatatttcataaaaaataatccttaacagaatctgccatacaatcctatcaagtgagaatagagacagaaatgtcaata |
24481119 |
T |
|
| Q |
137 |
tttgcattacaatcaacacaacaatttccttctttctaagtgtgaccttgaaagtcatatttttaagtaactctaaatagttatttcaaagattatttaa |
236 |
Q |
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| T |
24481120 |
tttgcattacaatcaacacaacaatttccttctttctaagtgtgaccttgaaagtcatatttttaagtaactctaaatagttatttcaaagattatttaa |
24481219 |
T |
|
| Q |
237 |
attccaaaagaataattttagactgcgtaaaagtcaagttaacaagctggtaatcatattcaagtcaaaaacgagtccaaaaacaccgagaattagtaca |
336 |
Q |
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| T |
24481220 |
attccaaa-gaataattttagactgcgtaaaagtcaagttaacaagctggtaatcatattcaagtcaaagacgagtccaaaaacaccgagaattagtaca |
24481318 |
T |
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| Q |
337 |
tttcaaaggtaattggaatttttcaagtacatatcaaaatgtatttctctatcccctcttttatcataagacaatataaccacacaaaagggaaacaaac |
436 |
Q |
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| T |
24481319 |
tttcaaaggtaattggaatttttcaaatacatatcaaaatgtatttctctatcccctcttttatcataagacaatataaccacacaaaagggaaacaaac |
24481418 |
T |
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| Q |
437 |
gtagaattgaagttggtaaaaatgacttaaatgcaaccacaactaccaaaggatgtccatccttcttcttcttgttcattgtcgttgttccacaaagttt |
536 |
Q |
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| T |
24481419 |
gtagaattgaagttggtaaaaatgacttaaatgcaaccacaacaaccaaaggatgtccatccttattcttcttgttcattgtcgttgtcccacaaagttt |
24481518 |
T |
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| Q |
537 |
acacatgtaaat |
548 |
Q |
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| T |
24481519 |
acacatgtaaat |
24481530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 35328275 - 35328158
Alignment:
| Q |
187 |
aaagtcatatttttaagtaactctaaatagttatttcaaagattatttaaattccaaaagaataattttagactgcgtaaaagtcaagttaacaagctgg |
286 |
Q |
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||||| |||||| |||| || || ||| |||| |||||| |||||| ||||||| || | ||| || |||||| || ||||||||||||| ||||||| |
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| T |
35328275 |
aaagttatatttctaagcaaatcaaaacagttttttcaatgattatataaattctaata-aatgatcttagacggcataaaagtcaagttgacaagctaa |
35328177 |
T |
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| Q |
287 |
taatcatattcaagtcaaa |
305 |
Q |
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| T |
35328176 |
gaatcatattcaagtcaaa |
35328158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 316
Target Start/End: Complemental strand, 34799513 - 34799349
Alignment:
| Q |
153 |
cacaacaatttccttctttctaagtgtga---ccttgaaagtcatatttttaagtaactctaaatagttatttcaaagattatttaaattccaaaagaat |
249 |
Q |
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||||||||||| ||||||| ||||||||| | |||||||||||||| |||| || || || |||| | ||| ||||| ||| |||||||| ||| |
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| T |
34799513 |
cacaacaattttcttctttgtaagtgtgagtacgctgaaagtcatatttctaagcaaatcataacagttttgccaacaattatataagttccaaaa-aat |
34799415 |
T |
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| Q |
250 |
aattttagactgcgtaaaagtcaagttaacaagctggtaatcatattcaagtcaaaaacgagtccaa |
316 |
Q |
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|||||||||| |||| |||| |||| | |||||| || ||||| ||||||| |||| |||||||||| |
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| T |
34799414 |
aattttagacggcgt-aaagccaagctgacaagccggaaatcagattcaagccaaagacgagtccaa |
34799349 |
T |
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