View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11966_low_3 (Length: 525)
Name: NF11966_low_3
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11966_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 7 - 510
Target Start/End: Complemental strand, 29672262 - 29671759
Alignment:
| Q |
7 |
atttaaccaccgtttgccgttatgatttcgataatcaactcaaatctacaatgatagctcatccgaaggttgatccagttgataagaatatgtatgcttt |
106 |
Q |
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| T |
29672262 |
atttaaccaccgtttgccgttatgatttcgataatcaactcaaatctacaatgatagctcatcccaaggttgatccagttgataagaatatgtatgcttt |
29672163 |
T |
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| Q |
107 |
gagctatgacgtagttcaaaagccttatttgaaatactttcgttttgatgcgtccggagttaagtctccggacgttgagattccgttggagcagcctact |
206 |
Q |
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| T |
29672162 |
gagctatgacgtagttcaaaagccttatttgaaatactttcgttttgatgcgtccggagttaagtctccggacgttgagattccgttggagcagcctact |
29672063 |
T |
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| Q |
207 |
atgatgcatgacttcgcgatcactgagaatttcgttgttgtgcctgatcaacaagttgtgtttaaattgggtgaaatgatccgtggtgggtcgcctgttg |
306 |
Q |
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| T |
29672062 |
atgatgcatgacttcgcgatcactgagaatttcgttgttgtgcctgatcaacaagttgtgtttaaattgggtgaaatgatccgtggtgggtcgcctgttg |
29671963 |
T |
|
| Q |
307 |
tttacgataaggagaaagtctcgaggttcggggttttatcaaagaatgctgaagattcttctgagatgatttggattgatgcaccagagtgtttctgttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671962 |
tttacgataaggagaaagtctcgaggttcggggttttatccaagaatgctgaagattcttctgagatgatttggattgatgcaccagagtgtttctgttt |
29671863 |
T |
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| Q |
407 |
tcatctgtggaatgcgtgggaagagcctgaaaatgatgaagttgtggtgattggatcgtgtatgacaccggctgattcgatattcaatgaatgtgaagag |
506 |
Q |
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| T |
29671862 |
tcatctgtggaatgcgtgggaagagcctgaaaatgatgaagttgtggtgattggatcatgtatgacaccggctgattcgatattcaatgaatgtgaagag |
29671763 |
T |
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| Q |
507 |
aatt |
510 |
Q |
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| T |
29671762 |
aatt |
29671759 |
T |
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