View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11966_low_4 (Length: 390)
Name: NF11966_low_4
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11966_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 48307677 - 48307291
Alignment:
| Q |
1 |
atgactcgtaacaaaatacaaaacggttcataacttcaaaatccgttagccactttggtccccgacattaaattggtgatcaagtgtacaaaaaagttaa |
100 |
Q |
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| T |
48307677 |
atgactcgtaacaaaatacaaaacggttcataactctaaaatccgtaagccactttgatccccgacattaaattggtgatcaagtgtataaaaaaattga |
48307578 |
T |
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| Q |
101 |
accgacatatttttgcttgacaaggatgatgcacgtggcattagagacaaaattgatggaaacaaaatggaatgagttccgtttaaatccctaaattcct |
200 |
Q |
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| T |
48307577 |
accgacatatttttggttgacaaggatggtgcacgtggcattagagagaaaattgacggaaacaaaatggaatgaattcactttaaatccctaaattcct |
48307478 |
T |
|
| Q |
201 |
agaattctaattcattccatcccttgttcaattccaaatccctaatcttattccttcttcttcctcttcattccatccaatcttccactaaataccaaaa |
300 |
Q |
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| T |
48307477 |
agaattctaattcattccatcccttgttcaattccaaatccctaatcttattccttcttcttcctcttcattccatccaatcttccactaaataccaaaa |
48307378 |
T |
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| Q |
301 |
tcgaatcacatgataatggatatggtggtgcaaacactttcgta---aattggattagcttttgttggtttagcctttgcttctcct |
384 |
Q |
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| T |
48307377 |
tcgaatcacatgataatgaatatggtggtgcaaacactttcgtaattaattggattagcttttgttggtttagcttttgcttctcct |
48307291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 17240679 - 17240855
Alignment:
| Q |
33 |
acttcaaaatccgttagccactttggtccccgacattaaattggtga-tcaagtgtacaaaaaagttaaaccgacatattttt-gcttgacaaggatgat |
130 |
Q |
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| T |
17240679 |
acttcaaaattcattagccactttagtccccgacgttaaatttggcagtaaagtgtccaaaaaaattgagttgacattttttttggctgacaaagatgat |
17240778 |
T |
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| Q |
131 |
gcacgtggcattagagacaaaattgatggaaacaaaatggaatgagttccgtttaaatccctaaattcctagaattc |
207 |
Q |
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| T |
17240779 |
gtttgtggtattagggatgaaattgatagaatcaaaattgactgtgttcactttaaatccctaaattcctagaattc |
17240855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 4940477 - 4940555
Alignment:
| Q |
209 |
aattcattccatcccttgttcaattccaaatccctaatcttattccttcttcttcctcttcattccatccaatcttcca |
287 |
Q |
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| T |
4940477 |
aattcattccatcccttaatcaattccaaattcttaatcttactcattcttcctcctccttattcttttcaatcttcca |
4940555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 17588882 - 17588923
Alignment:
| Q |
279 |
aatcttccactaaataccaaaatcgaatcacatgataatgga |
320 |
Q |
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| T |
17588882 |
aatcttccattgaataccaaaatcgaatcacatgatgatgga |
17588923 |
T |
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